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OPENSEQ.org

RAIA - YPJD
UniProt:
Length: 376
Sequences: 720
Seq/Len: 2.02
I_Prob: 0.19
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
20_V 215_V 1.39 0.19
44_E 86_R 1.39 0.19
62_V 107_A 1.34 0.17
73_A 211_V 1.32 0.16
14_P 141_A 1.29 0.15
81_L 141_A 1.26 0.14
73_A 224_L 1.25 0.13
49_V 136_A 1.18 0.11
12_I 99_F 1.13 0.09
28_E 253_F 1.08 0.08
80_K 92_L 1.08 0.08
26_K 153_Y 1.07 0.07
1_M 234_G 1.06 0.07
96_R 191_L 1.05 0.07
16_I 155_L 1.05 0.07
29_K 190_T 1.04 0.07
24_L 39_V 1.04 0.07
29_K 189_L 1.03 0.07
49_V 183_G 1.03 0.07
13_T 144_Y 1.03 0.06
13_T 258_V 1.02 0.06
50_A 218_F 1.02 0.06
60_V 64_S 1.00 0.06
62_V 223_L 0.98 0.06
24_L 215_V 0.94 0.05
70_M 116_T 0.91 0.04
9_Q 134_S 0.91 0.04
28_E 220_Y 0.89 0.04
42_S 188_T 0.89 0.04
68_E 116_T 0.89 0.04
1_M 188_T 0.89 0.04
3_M 77_C 0.89 0.04
19_H 188_T 0.89 0.04
85_L 124_M 0.88 0.04
85_L 230_E 0.88 0.04
25_A 136_A 0.87 0.04
91_K 222_V 0.87 0.04
45_P 102_I 0.86 0.04
61_L 257_I 0.86 0.04
85_L 153_Y 0.86 0.04
91_K 203_S 0.86 0.03
78_I 96_V 0.86 0.03
68_E 40_I 0.85 0.03
74_I 155_L 0.85 0.03
51_D 245_A 0.85 0.03
14_P 234_G 0.85 0.03
82_E 173_E 0.85 0.03
18_Q 43_V 0.85 0.03
7_S 258_V 0.85 0.03
87_K 101_L 0.83 0.03
89_Q 186_L 0.83 0.03
16_I 45_H 0.83 0.03
18_Q 42_L 0.83 0.03
51_D 95_I 0.83 0.03
93_E 101_L 0.83 0.03
24_L 237_V 0.83 0.03
91_K 57_G 0.83 0.03
50_A 220_Y 0.83 0.03
61_L 15_S 0.82 0.03
84_Q 95_I 0.82 0.03
96_R 143_L 0.82 0.03
45_P 38_A 0.82 0.03
45_P 167_P 0.82 0.03
3_M 243_A 0.81 0.03
13_T 213_S 0.81 0.03
83_R 42_L 0.81 0.03
63_A 73_S 0.81 0.03
61_L 20_V 0.81 0.03
24_L 211_V 0.81 0.03
11_E 43_V 0.80 0.03
70_M 128_I 0.80 0.03
16_I 232_W 0.80 0.03
27_L 71_L 0.80 0.03
12_I 196_F 0.79 0.03
91_K 142_A 0.79 0.03
51_D 255_S 0.79 0.03
26_K 72_V 0.79 0.03
5_I 102_I 0.79 0.03
50_A 168_P 0.79 0.03
16_I 16_L 0.78 0.03
85_L 24_L 0.78 0.03
86_N 190_T 0.78 0.03
23_R 240_F 0.78 0.03
33_H 130_L 0.78 0.03
23_R 129_G 0.78 0.03
13_T 155_L 0.78 0.03
16_I 228_Y 0.77 0.03
57_P 242_V 0.77 0.03
13_T 135_Y 0.77 0.02
58_N 10_V 0.77 0.02
11_E 16_L 0.77 0.02
58_N 171_S 0.77 0.02
49_V 147_Q 0.77 0.02
91_K 223_L 0.77 0.02
90_H 136_A 0.77 0.02
62_V 68_V 0.77 0.02
70_M 252_Y 0.77 0.02
12_I 136_A 0.77 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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