May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PPNK - SRP54
UniProt:
Length: 745
Sequences: 1466
Seq/Len: 2.02
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
220_P 8_R 1.11 0.01
277_Y 27_V 1.06 0.01
151_L 357_M 1.04 0.01
176_S 217_T 1.02 0.01
208_L 280_E 1.01 0.00
118_E 246_V 1.00 0.00
193_S 9_L 1.00 0.00
182_S 343_N 0.97 0.00
189_A 185_D 0.94 0.00
246_S 30_T 0.89 0.00
151_L 338_L 0.89 0.00
212_F 69_T 0.89 0.00
162_F 319_L 0.87 0.00
148_E 127_K 0.86 0.00
92_G 425_R 0.85 0.00
93_I 187_L 0.85 0.00
154_G 137_A 0.83 0.00
252_I 394_I 0.83 0.00
189_A 79_R 0.82 0.00
214_H 419_Q 0.82 0.00
262_R 341_M 0.81 0.00
179_L 340_Q 0.81 0.00
191_S 346_G 0.81 0.00
277_Y 160_F 0.81 0.00
85_R 7_D 0.81 0.00
180_I 56_K 0.80 0.00
205_A 45_L 0.80 0.00
257_D 29_D 0.80 0.00
85_R 212_I 0.80 0.00
220_P 219_F 0.80 0.00
267_L 268_K 0.80 0.00
150_V 343_N 0.79 0.00
281_L 219_F 0.78 0.00
116_V 177_K 0.78 0.00
133_V 390_K 0.78 0.00
209_V 262_I 0.78 0.00
24_E 373_L 0.78 0.00
203_L 32_R 0.77 0.00
148_E 20_G 0.77 0.00
206_I 422_D 0.76 0.00
21_T 390_K 0.76 0.00
227_S 219_F 0.76 0.00
77_L 265_I 0.76 0.00
142_I 412_D 0.76 0.00
171_A 262_I 0.75 0.00
277_Y 307_I 0.75 0.00
176_S 9_L 0.75 0.00
18_T 325_K 0.75 0.00
159_M 357_M 0.75 0.00
34_G 157_V 0.75 0.00
34_G 238_E 0.75 0.00
222_V 23_T 0.74 0.00
76_M 168_P 0.74 0.00
128_L 205_I 0.74 0.00
161_E 373_L 0.74 0.00
75_N 421_D 0.74 0.00
244_C 30_T 0.74 0.00
203_L 36_M 0.73 0.00
276_S 369_D 0.73 0.00
67_A 314_A 0.73 0.00
62_Q 246_V 0.73 0.00
221_L 208_V 0.73 0.00
271_H 175_A 0.72 0.00
184_P 247_L 0.72 0.00
168_E 82_L 0.72 0.00
8_I 288_D 0.72 0.00
5_F 159_F 0.71 0.00
37_V 210_A 0.71 0.00
182_S 102_V 0.71 0.00
179_L 274_G 0.71 0.00
193_S 151_L 0.70 0.00
160_I 223_A 0.70 0.00
198_I 88_E 0.70 0.00
166_I 63_E 0.70 0.00
199_L 395_K 0.70 0.00
92_G 414_N 0.70 0.00
67_A 13_L 0.70 0.00
287_W 163_D 0.70 0.00
164_V 395_K 0.70 0.00
229_I 27_V 0.70 0.00
192_L 351_M 0.69 0.00
248_I 282_L 0.69 0.00
172_F 201_M 0.69 0.00
258_V 177_K 0.69 0.00
225_S 32_R 0.69 0.00
193_S 208_V 0.69 0.00
211_M 13_L 0.69 0.00
82_T 27_V 0.69 0.00
233_F 412_D 0.68 0.00
221_L 334_F 0.68 0.00
223_I 137_A 0.68 0.00
235_H 186_V 0.68 0.00
225_S 131_K 0.68 0.00
116_V 416_L 0.68 0.00
212_F 16_I 0.68 0.00
75_N 410_V 0.68 0.00
209_V 76_K 0.68 0.00
34_G 34_V 0.68 0.00
115_D 341_M 0.67 0.00
184_P 259_A 0.67 0.00
229_I 292_S 0.67 0.00
287_W 219_F 0.67 0.00
69_V 419_Q 0.67 0.00
193_S 305_E 0.67 0.00
26_L 408_M 0.67 0.00
93_I 213_N 0.67 0.00
260_I 432_K 0.67 0.00
231_L 129_K 0.67 0.00
67_A 185_D 0.67 0.00
47_L 354_L 0.67 0.00
59_E 417_L 0.67 0.00
175_R 111_A 0.67 0.00
102_T 209_H 0.67 0.00
90_V 137_A 0.66 0.00
114_A 199_E 0.66 0.00
191_S 116_S 0.66 0.00
151_L 213_N 0.66 0.00
217_S 275_V 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0299 seconds.