May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
BAMB - YFGM
UniProt: P77774 - P76576
Length: 598
Sequences: 393
Seq/Len: 0.67
I_Prob: 0.00
BAMB - Outer membrane protein assembly factor BamB
Paralog alert: 0.60 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: BAMB 		YFGM - UPF0070 protein YfgM
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YFGM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4jsnDC:BA:DC:BAContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
296_I 197_M 1.40 0.00
290_I 197_M 1.32 0.00
382_A 141_A 1.30 0.00
208_V 30_I 1.27 0.00
126_S 161_A 1.27 0.00
164_I 97_Q 1.26 0.00
232_I 167_A 1.25 0.00
351_V 14_V 1.24 0.00
297_Y 30_I 1.23 0.00
390_I 15_K 1.23 0.00
15_T 112_Q 1.22 0.00
67_L 143_A 1.22 0.00
346_L 172_G 1.19 0.00
174_L 114_G 1.19 0.00
233_S 87_G 1.18 0.00
278_M 26_A 1.16 0.00
194_L 54_S 1.15 0.00
63_L 11_V 1.14 0.00
258_V 112_Q 1.14 0.00
81_V 39_W 1.13 0.00
377_K 7_E 1.12 0.00
309_T 42_W 1.11 0.00
69_D 155_G 1.10 0.00
362_V 112_Q 1.10 0.00
305_V 183_A 1.09 0.00
84_L 21_N 1.08 0.00
335_G 149_D 1.08 0.00
213_N 173_D 1.08 0.00
177_A 126_V 1.07 0.00
176_E 102_N 1.07 0.00
297_Y 57_Y 1.07 0.00
37_T 140_Q 1.07 0.00
233_S 115_L 1.06 0.00
241_I 128_N 1.05 0.00
160_G 90_A 1.04 0.00
339_V 22_G 1.03 0.00
244_L 161_A 1.03 0.00
372_V 33_V 1.02 0.00
241_I 40_R 1.02 0.00
263_Y 131_L 1.02 0.00
305_V 126_V 1.02 0.00
380_I 60_A 1.01 0.00
73_Y 176_G 1.01 0.00
123_Y 2_E 1.01 0.00
168_N 9_D 1.00 0.00
358_A 124_K 1.00 0.00
176_E 175_Q 1.00 0.00
259_F 133_R 1.00 0.00
270_L 104_L 1.00 0.00
303_D 40_R 1.00 0.00
198_S 20_E 0.99 0.00
147_V 7_E 0.99 0.00
237_G 184_G 0.99 0.00
127_E 2_E 0.99 0.00
150_E 86_Y 0.99 0.00
356_F 23_K 0.99 0.00
67_L 176_G 0.98 0.00
36_P 173_D 0.98 0.00
244_L 42_W 0.98 0.00
202_T 50_A 0.97 0.00
195_R 17_F 0.97 0.00
305_V 172_G 0.96 0.00
333_Y 26_A 0.96 0.00
21_S 10_Q 0.96 0.00
323_L 42_W 0.96 0.00
160_G 103_E 0.96 0.00
248_D 130_R 0.96 0.00
156_V 120_D 0.95 0.00
379_L 7_E 0.95 0.00
378_L 42_W 0.95 0.00
283_L 42_W 0.95 0.00
363_D 34_G 0.95 0.00
247_V 126_V 0.95 0.00
307_A 113_Q 0.95 0.00
76_D 113_Q 0.94 0.00
111_L 148_L 0.94 0.00
22_L 35_A 0.94 0.00
51_S 38_G 0.94 0.00
278_M 154_E 0.93 0.00
134_L 29_V 0.93 0.00
274_S 148_L 0.93 0.00
173_A 160_V 0.93 0.00
178_D 12_E 0.92 0.00
365_S 84_N 0.92 0.00
44_P 30_I 0.92 0.00
376_G 105_E 0.92 0.00
278_M 163_L 0.92 0.00
18_S 43_N 0.92 0.00
42_F 197_M 0.92 0.00
299_V 30_I 0.91 0.00
71_V 33_V 0.91 0.00
328_T 32_G 0.91 0.00
256_G 158_A 0.91 0.00
265_G 15_K 0.90 0.00
48_W 95_A 0.90 0.00
50_T 179_S 0.89 0.00
373_A 182_E 0.89 0.00
68_A 188_D 0.89 0.00
368_Q 98_F 0.89 0.00
73_Y 124_K 0.89 0.00
180_A 38_G 0.89 0.00
303_D 156_W 0.89 0.00
241_I 42_W 0.89 0.00
349_I 63_A 0.89 0.00
175_N 26_A 0.89 0.00
73_Y 170_S 0.89 0.00
53_G 7_E 0.89 0.00
173_A 100_D 0.88 0.00
122_V 139_K 0.88 0.00
145_T 71_S 0.88 0.00
175_N 57_Y 0.88 0.00
212_D 42_W 0.88 0.00
128_K 146_K 0.88 0.00
233_S 35_A 0.88 0.00
341_D 144_A 0.88 0.00
382_A 201_I 0.88 0.00
312_G 57_Y 0.88 0.00
341_D 166_E 0.88 0.00
52_V 120_D 0.87 0.00
260_A 167_A 0.87 0.00
135_N 154_E 0.87 0.00
375_D 53_A 0.87 0.00
296_I 19_A 0.87 0.00
319_Q 13_A 0.87 0.00
209_V 25_L 0.87 0.00
36_P 171_K 0.87 0.00
384_D 12_E 0.87 0.00
373_A 95_A 0.87 0.00
18_S 48_D 0.87 0.00
256_G 150_T 0.87 0.00
26_E 76_E 0.87 0.00
190_P 17_F 0.86 0.00
176_E 61_V 0.86 0.00
279_W 148_L 0.86 0.00
249_T 146_K 0.86 0.00
289_F 56_A 0.86 0.00
190_P 6_N 0.86 0.00
119_G 205_S 0.86 0.00
100_K 146_K 0.86 0.00
76_D 10_Q 0.85 0.00
346_L 148_L 0.85 0.00
296_I 25_L 0.85 0.00
263_Y 144_A 0.85 0.00
18_S 44_S 0.85 0.00
377_K 199_M 0.85 0.00
82_K 25_L 0.85 0.00
162_V 168_L 0.85 0.00
66_A 143_A 0.85 0.00
249_T 72_I 0.85 0.00
294_N 14_V 0.85 0.00
247_V 58_Q 0.85 0.00
167_S 89_L 0.84 0.00
298_L 30_I 0.84 0.00
113_G 172_G 0.84 0.00
249_T 32_G 0.84 0.00
280_K 32_G 0.84 0.00
19_G 189_V 0.84 0.00
125_G 133_R 0.84 0.00
241_I 14_V 0.84 0.00
390_I 43_N 0.84 0.00
318_T 103_E 0.84 0.00
209_V 57_Y 0.84 0.00
129_A 51_R 0.84 0.00
216_V 52_S 0.84 0.00
299_V 160_V 0.84 0.00
208_V 14_V 0.84 0.00
245_S 89_L 0.84 0.00
150_E 17_F 0.83 0.00
200_P 8_N 0.83 0.00
55_G 13_A 0.83 0.00
348_W 133_R 0.83 0.00
231_R 137_Q 0.83 0.00
232_I 78_F 0.83 0.00
281_R 168_L 0.83 0.00
191_S 126_V 0.83 0.00
19_G 172_G 0.83 0.00
45_T 66_E 0.83 0.00
237_G 200_K 0.83 0.00
207_A 162_D 0.83 0.00
379_L 26_A 0.83 0.00
176_E 118_T 0.83 0.00
327_L 144_A 0.83 0.00
374_A 102_N 0.83 0.00
384_D 143_A 0.82 0.00
243_R 111_L 0.82 0.00
84_L 109_A 0.82 0.00
174_L 31_L 0.82 0.00
94_S 201_I 0.82 0.00
311_D 31_L 0.82 0.00
55_G 30_I 0.82 0.00
283_L 9_D 0.82 0.00
27_E 71_S 0.82 0.00
95_V 76_E 0.82 0.00
172_Q 25_L 0.82 0.00
253_V 73_P 0.82 0.00
118_S 173_D 0.82 0.00
369_T 191_P 0.82 0.00
145_T 178_R 0.81 0.00
83_A 4_Y 0.81 0.00
349_I 113_Q 0.81 0.00
196_G 34_G 0.81 0.00
312_G 146_K 0.81 0.00
307_A 95_A 0.81 0.00
322_L 166_E 0.81 0.00
307_A 145_L 0.81 0.00
74_A 190_T 0.81 0.00
33_S 118_T 0.81 0.00
93_W 11_V 0.81 0.00
316_L 93_E 0.81 0.00
328_T 36_L 0.81 0.00
182_K 33_V 0.81 0.00
255_N 96_Q 0.81 0.00
297_Y 143_A 0.81 0.00
70_N 99_V 0.81 0.00
335_G 37_I 0.81 0.00
196_G 6_N 0.81 0.00
87_D 115_L 0.81 0.00
18_S 191_P 0.81 0.00
38_V 190_T 0.81 0.00
153_S 17_F 0.81 0.00
91_E 175_Q 0.81 0.00
163_L 153_G 0.81 0.00
120_G 124_K 0.81 0.00
12_L 160_V 0.81 0.00
372_V 76_E 0.81 0.00
269_A 8_N 0.80 0.00
376_G 101_K 0.80 0.00
360_Q 178_R 0.80 0.00
44_P 32_G 0.80 0.00
255_N 148_L 0.80 0.00
75_A 148_L 0.80 0.00
305_V 101_K 0.80 0.00
129_A 101_K 0.80 0.00
384_D 126_V 0.80 0.00
156_V 164_R 0.80 0.00
94_S 134_V 0.80 0.00
65_P 89_L 0.80 0.00
270_L 57_Y 0.80 0.00
106_K 83_K 0.79 0.00
209_V 34_G 0.79 0.00
308_L 146_K 0.79 0.00
212_D 18_F 0.79 0.00
310_I 33_V 0.79 0.00
267_L 6_N 0.79 0.00
299_V 2_E 0.79 0.00
284_G 141_A 0.79 0.00
192_L 200_K 0.79 0.00
88_D 81_E 0.79 0.00
232_I 41_Y 0.79 0.00
249_T 25_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3456 seconds.