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OPENSEQ.org

SUCP - YCJN
UniProt: P76041 - P76042
Length: 989
Sequences: 573
Seq/Len: 0.62
I_Prob: 0.00

SUCP - Putative sucrose phosphorylase
Paralog alert: 0.64 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: AMY2 GLGX MALZ SUCP TREC
YCJN - Putative ABC transporter periplasmic-binding protein YcjN
Paralog alert: 0.81 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
467_H 53_F 1.06 0.00
63_L 286_V 0.99 0.00
125_L 336_P 0.98 0.00
150_G 313_E 0.97 0.00
464_T 30_S 0.93 0.00
275_P 338_A 0.90 0.00
69_F 175_A 0.89 0.00
475_R 48_K 0.88 0.00
159_D 326_D 0.87 0.00
552_P 326_D 0.86 0.00
479_L 226_E 0.85 0.00
118_Q 26_K 0.84 0.00
470_Y 417_Q 0.83 0.00
515_T 411_D 0.82 0.00
101_I 56_E 0.81 0.00
81_F 206_A 0.80 0.00
118_Q 55_K 0.80 0.00
278_D 326_D 0.80 0.00
213_D 424_D 0.78 0.00
145_L 231_L 0.78 0.00
84_V 397_V 0.78 0.00
527_V 136_S 0.78 0.00
68_T 374_N 0.77 0.00
555_V 62_V 0.77 0.00
112_E 71_A 0.77 0.00
121_E 421_K 0.77 0.00
84_V 58_P 0.76 0.00
517_L 147_I 0.76 0.00
71_Q 61_T 0.76 0.00
204_S 232_T 0.76 0.00
277_K 326_D 0.75 0.00
104_H 288_T 0.74 0.00
84_V 190_L 0.74 0.00
84_V 120_G 0.74 0.00
462_E 65_V 0.74 0.00
118_Q 40_Q 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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