May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LIPB - YBED
UniProt: P60720 - P0A8J4
Length: 300
Sequences: 277
Seq/Len: 0.95
I_Prob: 0.02

LIPB - Octanoyltransferase
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LIPB
YBED - UPF0250 protein YbeD
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBED
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
84_V 34_V 1.51 0.02
137_C 16_T 1.43 0.01
142_R 11_F 1.41 0.01
105_L 34_V 1.25 0.01
41_V 51_S 1.23 0.01
40_L 76_E 1.21 0.01
65_P 31_V 1.16 0.01
137_C 59_S 1.16 0.01
153_A 40_P 1.12 0.01
8_V 68_E 1.10 0.01
117_G 48_K 1.07 0.01
46_V 53_G 1.07 0.01
167_N 35_V 1.05 0.01
121_H 32_V 1.04 0.01
204_N 57_S 1.03 0.01
179_I 69_Q 1.03 0.01
109_V 20_M 1.02 0.00
109_V 73_L 1.00 0.00
141_L 13_T 1.00 0.00
61_P 81_D 0.99 0.00
108_T 2_K 0.99 0.00
118_I 65_T 0.98 0.00
205_N 80_I 0.98 0.00
191_I 67_I 0.98 0.00
191_I 86_V 0.98 0.00
172_A 56_H 0.98 0.00
137_C 5_L 0.96 0.00
41_V 55_Y 0.96 0.00
191_I 5_L 0.95 0.00
183_K 55_Y 0.95 0.00
69_S 69_Q 0.94 0.00
179_I 5_L 0.94 0.00
191_I 6_N 0.94 0.00
142_R 67_I 0.93 0.00
143_I 24_L 0.93 0.00
9_R 42_D 0.93 0.00
92_K 28_V 0.92 0.00
6_I 54_N 0.92 0.00
134_K 68_E 0.92 0.00
15_P 68_E 0.91 0.00
148_S 31_V 0.90 0.00
4_D 51_S 0.90 0.00
112_T 19_V 0.89 0.00
120_A 3_T 0.89 0.00
58_I 49_P 0.89 0.00
95_K 23_A 0.88 0.00
80_P 65_T 0.87 0.00
6_I 52_K 0.87 0.00
42_E 62_I 0.87 0.00
26_F 59_S 0.86 0.00
143_I 35_V 0.86 0.00
179_I 64_A 0.86 0.00
105_L 63_N 0.85 0.00
123_R 31_V 0.85 0.00
180_S 28_V 0.85 0.00
191_I 64_A 0.84 0.00
118_I 46_T 0.84 0.00
16_Y 13_T 0.84 0.00
165_R 19_V 0.83 0.00
49_Q 65_T 0.83 0.00
98_V 86_V 0.82 0.00
195_L 83_V 0.82 0.00
196_L 4_K 0.81 0.00
149_F 59_S 0.81 0.00
145_R 58_V 0.81 0.00
177_A 66_H 0.81 0.00
47_F 51_S 0.81 0.00
56_E 41_G 0.81 0.00
157_N 65_T 0.81 0.00
180_S 51_S 0.81 0.00
97_G 11_F 0.81 0.00
109_V 64_A 0.80 0.00
120_A 35_V 0.80 0.00
161_S 33_E 0.80 0.00
118_I 42_D 0.80 0.00
58_I 60_I 0.80 0.00
7_L 13_T 0.80 0.00
27_T 34_V 0.80 0.00
14_Q 41_G 0.80 0.00
176_M 75_E 0.79 0.00
49_Q 9_L 0.79 0.00
184_P 66_H 0.79 0.00
41_V 72_T 0.79 0.00
28_D 41_G 0.79 0.00
55_A 66_H 0.78 0.00
95_K 40_P 0.78 0.00
118_I 27_L 0.78 0.00
54_K 42_D 0.78 0.00
58_I 46_T 0.78 0.00
101_L 57_S 0.78 0.00
183_K 15_F 0.77 0.00
111_N 24_L 0.77 0.00
203_L 51_S 0.77 0.00
101_L 38_H 0.77 0.00
52_A 39_A 0.77 0.00
179_I 58_V 0.76 0.00
143_I 8_L 0.76 0.00
69_S 5_L 0.76 0.00
37_E 83_V 0.75 0.00
41_V 17_Y 0.75 0.00
149_F 71_E 0.75 0.00
131_V 72_T 0.75 0.00
37_E 39_A 0.75 0.00
116_L 44_T 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.056 seconds.