May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MNME - YIDD
UniProt: P25522 - P0A8C8
Length: 539
Sequences: 418
Seq/Len: 0.80
I_Prob: 0.00

MNME - tRNA modification GTPase MnmE
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: MNME
YIDD - Putative membrane protein insertion efficiency factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YIDD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
321_I 20_Q 1.39 0.00
69_G 51_I 1.26 0.00
155_R 72_D 1.25 0.00
261_I 13_I 1.21 0.00
15_G 32_R 1.18 0.00
235_A 45_L 1.10 0.00
177_P 53_G 1.10 0.00
64_A 33_F 1.08 0.00
281_V 65_H 1.08 0.00
445_R 61_V 1.07 0.00
53_D 8_G 1.06 0.00
107_R 61_V 1.05 0.00
44_R 50_V 1.03 0.00
132_L 41_G 1.03 0.00
289_A 30_H 1.02 0.00
268_I 61_V 1.00 0.00
431_S 63_K 0.97 0.00
63_I 47_R 0.96 0.00
89_I 48_F 0.96 0.00
355_I 23_I 0.94 0.00
264_M 67_L 0.93 0.00
35_T 51_I 0.93 0.00
178_D 72_D 0.93 0.00
59_L 26_L 0.93 0.00
387_L 12_L 0.92 0.00
293_I 17_R 0.92 0.00
296_A 53_G 0.92 0.00
346_M 17_R 0.91 0.00
94_L 8_G 0.91 0.00
387_L 47_R 0.91 0.00
386_F 58_V 0.90 0.00
310_A 61_V 0.90 0.00
259_I 15_L 0.90 0.00
380_T 36_T 0.90 0.00
140_A 43_E 0.89 0.00
185_S 27_L 0.88 0.00
10_Q 42_I 0.88 0.00
22_L 61_V 0.88 0.00
248_A 48_F 0.88 0.00
42_K 18_V 0.87 0.00
144_A 53_G 0.87 0.00
189_I 61_V 0.87 0.00
167_R 76_P 0.87 0.00
36_V 52_K 0.87 0.00
220_V 53_G 0.86 0.00
202_A 61_V 0.86 0.00
256_R 36_T 0.86 0.00
153_S 59_K 0.86 0.00
146_N 52_K 0.86 0.00
137_S 33_F 0.86 0.00
221_I 42_I 0.85 0.00
322_A 11_V 0.85 0.00
310_A 34_T 0.85 0.00
138_E 58_V 0.85 0.00
17_G 32_R 0.85 0.00
71_N 51_I 0.84 0.00
105_I 34_T 0.84 0.00
32_V 8_G 0.84 0.00
213_L 45_L 0.84 0.00
145_L 16_I 0.84 0.00
222_A 28_G 0.84 0.00
174_I 43_E 0.84 0.00
430_L 63_K 0.83 0.00
201_D 16_I 0.83 0.00
328_L 79_P 0.83 0.00
434_T 8_G 0.83 0.00
419_L 33_F 0.83 0.00
318_P 36_T 0.83 0.00
329_P 16_I 0.83 0.00
178_D 67_L 0.82 0.00
57_S 13_I 0.82 0.00
220_V 44_A 0.82 0.00
246_D 23_I 0.82 0.00
56_G 17_R 0.82 0.00
219_V 65_H 0.81 0.00
157_N 11_V 0.81 0.00
69_G 30_H 0.80 0.00
117_L 13_I 0.80 0.00
129_I 43_E 0.80 0.00
233_L 33_F 0.80 0.00
262_D 16_I 0.80 0.00
233_L 65_H 0.80 0.00
204_R 29_P 0.79 0.00
128_A 28_G 0.79 0.00
196_V 59_K 0.79 0.00
268_I 41_G 0.79 0.00
166_L 32_R 0.79 0.00
73_F 15_L 0.79 0.00
287_E 59_K 0.79 0.00
406_G 32_R 0.78 0.00
303_V 33_F 0.78 0.00
144_A 49_G 0.78 0.00
276_E 61_V 0.78 0.00
54_A 57_T 0.78 0.00
105_I 58_V 0.78 0.00
423_L 63_K 0.78 0.00
435_G 44_A 0.77 0.00
149_Q 25_P 0.77 0.00
299_V 26_L 0.77 0.00
267_H 47_R 0.77 0.00
79_L 33_F 0.77 0.00
246_D 55_W 0.76 0.00
177_P 49_G 0.76 0.00
372_L 29_P 0.76 0.00
365_V 21_R 0.76 0.00
30_R 61_V 0.76 0.00
146_N 63_K 0.76 0.00
227_A 23_I 0.75 0.00
158_H 15_L 0.75 0.00
331_T 30_H 0.75 0.00
248_A 33_F 0.75 0.00
378_F 45_L 0.75 0.00
278_S 36_T 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.088 seconds.