May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ARGD - PYRB
UniProt: P18335 - P0A786
Length: 717
Sequences: 922
Seq/Len: 1.34
I_Prob: 0.00

ARGD - Acetylornithine/succinyldiaminopimelate aminotransferase
Paralog alert: 0.89 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ARGD ASTC BIOA GABT GSA PAT PUUE
PYRB - Aspartate carbamoyltransferase catalytic chain
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: OTC1 OTC2 PYRB YGEW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
204_A 286_Y 1.00 0.00
155_P 300_L 0.84 0.00
246_V 248_F 0.79 0.00
19_P 176_A 0.78 0.00
318_F 46_A 0.78 0.00
376_M 88_T 0.77 0.00
228_V 250_L 0.73 0.00
395_R 255_L 0.72 0.00
232_M 199_I 0.72 0.00
187_T 26_A 0.70 0.00
295_A 80_T 0.70 0.00
165_P 176_A 0.70 0.00
90_G 182_G 0.69 0.00
245_G 215_S 0.69 0.00
306_E 33_A 0.69 0.00
361_G 289_Q 0.69 0.00
259_G 12_S 0.68 0.00
39_Q 109_Q 0.68 0.00
201_V 103_I 0.67 0.00
342_I 248_F 0.67 0.00
247_T 223_V 0.66 0.00
291_A 280_K 0.66 0.00
32_Q 187_F 0.66 0.00
366_V 264_V 0.65 0.00
212_L 255_L 0.65 0.00
19_P 86_G 0.64 0.00
335_I 121_G 0.64 0.00
81_F 101_D 0.64 0.00
299_F 214_S 0.64 0.00
263_I 89_L 0.63 0.00
214_E 198_Y 0.63 0.00
247_T 33_A 0.63 0.00
91_R 265_L 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.044 seconds.