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OPENSEQ.org

RL6 - RPOA
UniProt: P0AG55 - P0A7Z4
Length: 506
Sequences: 843
Seq/Len: 1.69
I_Prob: 0.27

RL6 - 50S ribosomal protein L6
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL6
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
95_R 106_G 1.50 0.27
169_V 221_A 1.14 0.10
176_K 282_V 1.13 0.10
67_T 295_L 1.11 0.09
105_L 109_P 1.11 0.09
41_V 100_L 1.09 0.08
4_V 288_E 1.07 0.08
173_E 266_S 1.06 0.07
176_K 280_D 1.01 0.06
32_E 140_I 1.00 0.06
92_V 264_V 0.99 0.06
70_A 182_R 0.98 0.06
43_V 74_V 0.98 0.06
143_Q 90_V 0.97 0.05
67_T 97_E 0.95 0.05
134_K 140_I 0.93 0.04
44_K 71_K 0.92 0.04
92_V 85_L 0.88 0.04
71_L 180_V 0.87 0.04
10_V 105_S 0.86 0.04
40_A 46_I 0.86 0.04
5_A 68_Y 0.86 0.04
158_K 53_G 0.86 0.04
11_V 88_L 0.86 0.04
65_A 24_A 0.85 0.03
103_I 283_Q 0.84 0.03
176_K 293_P 0.84 0.03
47_D 137_N 0.83 0.03
153_R 93_Q 0.83 0.03
83_F 51_M 0.83 0.03
8_P 196_T 0.82 0.03
113_V 140_I 0.82 0.03
130_E 310_R 0.81 0.03
17_V 205_M 0.81 0.03
65_A 68_Y 0.81 0.03
135_G 65_L 0.79 0.03
139_Q 195_R 0.79 0.03
118_P 146_V 0.79 0.03
125_C 259_D 0.79 0.03
69_R 53_G 0.79 0.03
95_R 213_P 0.78 0.03
155_E 53_G 0.78 0.03
65_A 277_Y 0.78 0.02
153_R 107_I 0.77 0.02
92_V 11_P 0.77 0.02
170_R 156_S 0.76 0.02
169_V 186_N 0.76 0.02
63_A 309_S 0.76 0.02
104_N 257_V 0.76 0.02
117_L 14_V 0.76 0.02
23_V 282_V 0.76 0.02
173_E 89_A 0.75 0.02
77_I 144_I 0.75 0.02
67_T 146_V 0.75 0.02
77_I 122_E 0.75 0.02
4_V 203_I 0.75 0.02
53_G 156_S 0.75 0.02
123_A 39_L 0.74 0.02
44_K 27_T 0.74 0.02
111_H 20_S 0.74 0.02
137_D 85_L 0.74 0.02
37_L 102_L 0.73 0.02
143_Q 304_K 0.73 0.02
103_I 105_S 0.73 0.02
45_H 217_I 0.73 0.02
63_A 198_L 0.73 0.02
14_G 115_I 0.73 0.02
62_W 172_L 0.72 0.02
70_A 313_S 0.72 0.02
72_L 138_A 0.72 0.02
21_G 121_V 0.72 0.02
122_T 215_E 0.72 0.02
168_V 42_A 0.72 0.02
9_V 82_L 0.72 0.02
129_T 37_H 0.72 0.02
107_L 197_D 0.72 0.02
128_Q 72_E 0.72 0.02
94_Y 234_L 0.72 0.02
67_T 152_Y 0.72 0.02
63_A 279_G 0.71 0.02
131_I 106_G 0.71 0.02
148_L 81_I 0.71 0.02
15_V 81_I 0.71 0.02
55_R 42_A 0.71 0.02
102_V 212_D 0.70 0.02
76_V 287_V 0.70 0.02
9_V 103_N 0.70 0.02
9_V 24_A 0.70 0.02
11_V 171_L 0.70 0.02
44_K 123_I 0.69 0.02
41_V 142_M 0.69 0.02
162_V 74_V 0.69 0.02
128_Q 280_D 0.69 0.02
140_V 182_R 0.69 0.02
56_D 69_S 0.69 0.02
73_N 141_S 0.69 0.02
173_E 280_D 0.69 0.02
86_K 68_Y 0.69 0.02
37_L 176_C 0.69 0.02
143_Q 154_P 0.69 0.02
54_P 68_Y 0.69 0.02
82_G 30_P 0.68 0.02
166_D 314_L 0.68 0.02
11_V 123_I 0.68 0.02
170_R 26_V 0.68 0.02
72_L 176_C 0.68 0.02
119_A 87_G 0.68 0.02
13_A 309_S 0.68 0.02
53_G 190_A 0.68 0.02
166_D 251_P 0.67 0.01
173_E 304_K 0.67 0.01
40_A 25_K 0.67 0.01
43_V 224_L 0.67 0.01
7_A 88_L 0.67 0.01
11_V 56_V 0.67 0.01
68_A 282_V 0.67 0.01
162_V 173_V 0.67 0.01
112_P 303_I 0.66 0.01
62_W 8_F 0.66 0.01
86_K 163_E 0.66 0.01
106_S 80_E 0.66 0.01
113_V 93_Q 0.66 0.01
83_F 145_K 0.66 0.01
129_T 122_E 0.66 0.01
71_L 171_L 0.66 0.01
127_T 272_A 0.66 0.01
5_A 153_V 0.66 0.01
166_D 113_A 0.66 0.01
72_L 91_R 0.66 0.01
96_A 259_D 0.66 0.01
56_D 104_K 0.65 0.01
90_V 314_L 0.65 0.01
70_A 94_G 0.65 0.01
84_T 139_S 0.65 0.01
150_A 180_V 0.65 0.01
171_T 79_L 0.65 0.01
67_T 101_T 0.65 0.01
10_V 111_T 0.65 0.01
100_G 311_G 0.65 0.01
80_T 287_V 0.65 0.01
140_V 109_P 0.65 0.01
104_N 284_R 0.65 0.01
177_K 277_Y 0.65 0.01
130_E 291_K 0.65 0.01
63_A 177_Y 0.64 0.01
83_F 163_E 0.64 0.01
59_A 219_R 0.64 0.01
164_Y 132_H 0.64 0.01
105_L 36_G 0.64 0.01
97_A 132_H 0.64 0.01
41_V 64_V 0.64 0.01
169_V 96_D 0.64 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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