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OPENSEQ.org

FRE - PYRB
UniProt: P0AEN1 - P0A786
Length: 544
Sequences: 396
Seq/Len: 0.75
I_Prob: 0.00

FRE - NAD(P)H-flavin reductase
Paralog alert: 0.73 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FENR FRE
PYRB - Aspartate carbamoyltransferase catalytic chain
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: OTC1 OTC2 PYRB YGEW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
57_E 128_A 1.05 0.00
198_I 104_V 1.00 0.00
183_L 61_E 0.99 0.00
81_I 222_E 0.98 0.00
77_V 147_Q 0.97 0.00
134_I 263_K 0.97 0.00
51_M 220_M 0.97 0.00
108_L 46_A 0.95 0.00
137_Y 300_L 0.93 0.00
213_L 248_F 0.93 0.00
220_A 225_I 0.91 0.00
115_F 251_R 0.91 0.00
39_V 191_D 0.89 0.00
8_V 118_E 0.89 0.00
21_V 73_G 0.88 0.00
87_I 255_L 0.87 0.00
33_A 265_L 0.87 0.00
79_D 125_V 0.87 0.00
206_M 48_C 0.86 0.00
7_K 88_T 0.86 0.00
169_E 231_V 0.86 0.00
39_V 186_Y 0.86 0.00
61_I 80_T 0.85 0.00
51_M 265_L 0.85 0.00
43_E 21_L 0.84 0.00
218_R 220_M 0.83 0.00
179_T 296_A 0.83 0.00
119_R 231_V 0.82 0.00
8_V 178_A 0.81 0.00
28_A 33_A 0.81 0.00
186_V 94_S 0.81 0.00
208_K 248_F 0.80 0.00
30_S 262_M 0.80 0.00
169_E 166_Y 0.79 0.00
16_D 176_A 0.79 0.00
200_I 119_F 0.79 0.00
32_R 36_Q 0.79 0.00
72_L 153_L 0.79 0.00
173_A 21_L 0.78 0.00
144_Q 248_F 0.78 0.00
146_L 144_F 0.77 0.00
153_E 10_I 0.77 0.00
136_I 228_M 0.77 0.00
146_L 277_D 0.76 0.00
127_A 275_A 0.76 0.00
37_L 20_D 0.76 0.00
152_L 25_L 0.76 0.00
41_M 177_L 0.76 0.00
121_I 164_L 0.76 0.00
184_T 296_A 0.76 0.00
33_A 22_N 0.75 0.00
208_K 252_A 0.75 0.00
17_T 265_L 0.75 0.00
83_K 277_D 0.75 0.00
74_A 189_A 0.75 0.00
50_S 177_L 0.74 0.00
85_H 248_F 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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