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OPENSEQ.org
LPTA - LPTC
UniProt: P0ADV1 - P0ADV9
Length: 376
Sequences: 242
Seq/Len: 0.70
I_Prob: 0.13
LPTA - Lipopolysaccharide export system protein LptA
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTA 		LPTC - Lipopolysaccharide export system protein LptC
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_D 178_V 1.82 0.13
36_I 53_N 1.64 0.08
86_I 136_I 1.59 0.07
131_Q 94_W 1.47 0.05
131_Q 165_G 1.44 0.05
13_V 9_I 1.42 0.04
100_D 101_A 1.42 0.04
74_V 155_T 1.40 0.04
92_P 64_A 1.39 0.04
25_A 98_A 1.37 0.04
25_A 159_S 1.36 0.04
65_I 70_Y 1.35 0.04
47_M 138_L 1.34 0.04
39_E 179_R 1.32 0.03
122_V 64_A 1.30 0.03
41_D 11_V 1.30 0.03
93_A 5_R 1.29 0.03
64_T 52_Y 1.28 0.03
43_Q 40_P 1.26 0.03
67_I 52_Y 1.24 0.03
54_F 114_H 1.23 0.03
89_Y 166_N 1.23 0.02
72_V 96_V 1.22 0.02
140_K 9_I 1.22 0.02
109_A 182_Y 1.22 0.02
123_L 42_Y 1.20 0.02
32_T 64_A 1.20 0.02
40_S 160_G 1.19 0.02
38_I 131_T 1.18 0.02
86_I 180_T 1.17 0.02
134_S 138_L 1.17 0.02
147_E 25_A 1.17 0.02
91_K 132_D 1.16 0.02
155_D 88_K 1.13 0.02
76_R 109_L 1.12 0.02
93_A 179_R 1.11 0.02
163_V 166_N 1.11 0.02
26_F 50_L 1.10 0.02
131_Q 167_L 1.09 0.01
36_I 50_L 1.08 0.01
150_M 182_Y 1.07 0.01
80_E 45_E 1.07 0.01
100_D 149_V 1.07 0.01
51_V 70_Y 1.07 0.01
129_L 98_A 1.07 0.01
164_L 151_L 1.06 0.01
53_T 116_E 1.05 0.01
21_A 50_L 1.05 0.01
113_H 53_N 1.04 0.01
87_D 46_H 1.04 0.01
17_S 88_K 1.04 0.01
77_P 129_I 1.03 0.01
70_D 151_L 1.03 0.01
13_V 13_S 1.03 0.01
157_G 121_V 1.02 0.01
91_K 63_I 1.01 0.01
56_G 69_Y 1.01 0.01
38_I 42_Y 1.01 0.01
119_D 2_S 1.01 0.01
107_G 166_N 1.01 0.01
44_S 98_A 1.01 0.01
167_S 101_A 1.01 0.01
56_G 24_M 1.01 0.01
163_V 160_G 1.00 0.01
22_S 29_D 1.00 0.01
19_L 55_E 1.00 0.01
47_M 156_F 1.00 0.01
107_G 178_V 1.00 0.01
97_Q 178_V 0.99 0.01
57_N 39_D 0.99 0.01
105_V 85_T 0.99 0.01
67_I 33_V 0.99 0.01
28_V 89_D 0.99 0.01
46_D 24_M 0.97 0.01
129_L 138_L 0.97 0.01
93_A 68_E 0.97 0.01
40_S 177_K 0.97 0.01
144_L 77_W 0.97 0.01
22_S 65_Q 0.97 0.01
106_E 72_D 0.96 0.01
116_L 6_R 0.96 0.01
14_L 79_T 0.95 0.01
22_S 96_V 0.95 0.01
76_R 141_Q 0.95 0.01
91_K 69_Y 0.95 0.01
121_V 117_V 0.95 0.01
145_V 176_E 0.95 0.01
33_D 57_A 0.95 0.01
59_I 88_K 0.95 0.01
150_M 156_F 0.95 0.01
47_M 117_V 0.95 0.01
99_Q 173_E 0.94 0.01
131_Q 153_G 0.94 0.01
165_V 143_V 0.94 0.01
28_V 10_I 0.94 0.01
62_Q 131_T 0.94 0.01
125_G 137_N 0.94 0.01
52_V 119_A 0.93 0.01
125_G 67_V 0.93 0.01
33_D 99_D 0.93 0.01
21_A 12_L 0.93 0.01
38_I 136_I 0.93 0.01
19_L 69_Y 0.92 0.01
134_S 156_F 0.92 0.01
145_V 93_T 0.92 0.01
173_N 34_V 0.92 0.01
51_V 148_L 0.92 0.01
128_Y 109_L 0.92 0.01
28_V 14_L 0.92 0.01
105_V 111_L 0.91 0.01
54_F 101_A 0.91 0.01
93_A 165_G 0.91 0.01
31_D 42_Y 0.91 0.01
45_L 115_V 0.91 0.01
51_V 66_H 0.91 0.01
139_D 151_L 0.91 0.01
19_L 87_D 0.90 0.01
140_K 113_G 0.90 0.01
51_V 101_A 0.90 0.01
101_N 18_V 0.89 0.01
49_G 80_Q 0.89 0.01
23_I 80_Q 0.89 0.01
83_K 180_T 0.89 0.01
93_A 129_I 0.89 0.01
146_K 6_R 0.88 0.01
108_H 62_L 0.88 0.01
23_I 34_V 0.88 0.01
138_G 54_P 0.88 0.01
115_E 16_V 0.88 0.01
134_S 23_N 0.87 0.01
34_Q 80_Q 0.87 0.01
68_N 18_V 0.87 0.01
60_V 146_E 0.87 0.01
44_S 182_Y 0.86 0.01
75_T 165_G 0.86 0.01
53_T 182_Y 0.86 0.01
163_V 60_Y 0.86 0.01
75_T 101_A 0.86 0.01
70_D 101_A 0.86 0.01
151_Q 62_L 0.85 0.01
74_V 173_E 0.85 0.01
82_G 154_T 0.85 0.01
23_I 89_D 0.85 0.01
21_A 30_T 0.85 0.01
150_M 131_T 0.85 0.01
41_D 22_I 0.84 0.01
112_M 41_T 0.84 0.01
66_K 99_D 0.84 0.01
80_E 186_N 0.84 0.01
13_V 114_H 0.84 0.01
98_M 43_K 0.84 0.01
124_T 146_E 0.84 0.01
145_V 62_L 0.84 0.01
87_D 109_L 0.84 0.01
81_Q 159_S 0.84 0.01
35_P 83_L 0.83 0.01
155_D 45_E 0.83 0.01
99_Q 117_V 0.83 0.01
53_T 86_F 0.83 0.01
119_D 47_T 0.83 0.01
92_P 126_L 0.83 0.01
57_N 113_G 0.83 0.01
16_S 80_Q 0.83 0.01
100_D 40_P 0.83 0.01
41_D 90_K 0.83 0.01
32_T 174_L 0.83 0.01
56_G 186_N 0.82 0.01
109_A 48_D 0.82 0.01
20_A 175_I 0.82 0.01
102_G 94_W 0.82 0.01
164_L 176_E 0.82 0.01
89_Y 130_T 0.82 0.01
76_R 165_G 0.82 0.01
17_S 107_R 0.82 0.01
138_G 17_L 0.82 0.01
155_D 145_S 0.82 0.01
67_I 111_L 0.82 0.01
17_S 24_M 0.82 0.01
123_L 167_L 0.82 0.01
112_M 101_A 0.82 0.01
147_E 175_I 0.82 0.01
136_I 166_N 0.82 0.01
69_A 21_G 0.82 0.01
165_V 12_L 0.82 0.01
119_D 106_D 0.82 0.01
127_A 60_Y 0.82 0.01
29_T 70_Y 0.81 0.01
56_G 125_Q 0.81 0.01
74_V 109_L 0.81 0.01
82_G 37_N 0.81 0.01
111_Q 47_T 0.81 0.01
82_G 53_N 0.81 0.01
28_V 25_A 0.81 0.01
61_T 157_N 0.81 0.01
69_A 50_L 0.81 0.01
149_K 42_Y 0.81 0.01
72_V 67_V 0.81 0.01
146_K 157_N 0.81 0.01
72_V 149_V 0.81 0.01
13_V 88_K 0.81 0.01
105_V 152_Y 0.80 0.01
156_K 84_T 0.80 0.01
135_N 85_T 0.80 0.01
60_V 50_L 0.80 0.01
20_A 123_D 0.80 0.01
25_A 82_V 0.80 0.01
26_F 123_D 0.80 0.01
26_F 55_E 0.79 0.01
77_P 161_L 0.79 0.01
148_Q 120_L 0.79 0.01
61_T 41_T 0.79 0.01
20_A 147_D 0.79 0.01
60_V 49_T 0.79 0.01
123_L 64_A 0.79 0.01
25_A 123_D 0.79 0.01
79_G 129_I 0.79 0.01
167_S 106_D 0.79 0.01
163_V 124_S 0.79 0.01
105_V 49_T 0.79 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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