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OPENSEQ.org
ATPD - RSMG
UniProt: P0ABA4 - P0A6U5
Length: 384
Sequences: 240
Seq/Len: 0.63
I_Prob: 0.00
ATPD - ATP synthase subunit delta
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPD 		RSMG - Ribosomal RNA small subunit methyltransferase G
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSMG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
50_G 101_R 1.54 0.00
167_R 27_Y 1.50 0.00
92_V 8_L 1.46 0.00
146_S 9_L 1.46 0.00
155_A 103_R 1.29 0.00
99_L 72_V 1.28 0.00
172_A 58_I 1.27 0.00
157_D 44_R 1.25 0.00
101_A 173_I 1.25 0.00
130_E 164_L 1.23 0.00
57_L 193_L 1.22 0.00
121_Q 85_I 1.21 0.00
13_K 37_A 1.20 0.00
149_A 58_I 1.18 0.00
92_V 12_A 1.16 0.00
2_S 8_L 1.15 0.00
121_Q 177_P 1.15 0.00
149_A 86_V 1.15 0.00
157_D 141_F 1.15 0.00
24_S 68_R 1.12 0.00
76_L 173_I 1.12 0.00
170_R 102_V 1.12 0.00
104_E 81_I 1.11 0.00
115_A 136_V 1.10 0.00
148_M 27_Y 1.08 0.00
149_A 106_R 1.08 0.00
129_M 162_Y 1.08 0.00
146_S 14_I 1.08 0.00
133_L 37_A 1.08 0.00
143_I 14_I 1.07 0.00
137_V 122_S 1.07 0.00
7_V 102_V 1.07 0.00
162_G 173_I 1.06 0.00
109_V 66_G 1.04 0.00
3_E 190_V 1.03 0.00
155_A 173_I 1.03 0.00
139_L 66_G 1.03 0.00
177_S 31_L 1.02 0.00
28_W 49_M 1.02 0.00
133_L 95_L 1.01 0.00
10_P 84_S 1.01 0.00
60_S 105_L 1.01 0.00
52_L 132_P 1.01 0.00
89_L 72_V 1.00 0.00
117_L 33_K 1.00 0.00
61_F 178_E 1.00 0.00
162_G 58_I 0.99 0.00
2_S 101_R 0.99 0.00
19_A 80_G 0.99 0.00
104_E 200_V 0.99 0.00
115_A 54_I 0.99 0.00
130_E 153_H 0.98 0.00
171_L 103_R 0.98 0.00
25_V 202_I 0.98 0.00
28_W 84_S 0.98 0.00
156_G 107_Q 0.97 0.00
133_L 103_R 0.97 0.00
142_K 14_I 0.96 0.00
168_L 136_V 0.96 0.00
10_P 190_V 0.96 0.00
77_I 21_K 0.96 0.00
7_V 48_E 0.96 0.00
25_V 60_V 0.95 0.00
82_E 170_E 0.95 0.00
80_M 101_R 0.95 0.00
148_M 68_R 0.95 0.00
125_I 1_M 0.94 0.00
96_F 10_K 0.94 0.00
120_Q 21_K 0.94 0.00
83_N 165_K 0.94 0.00
167_R 107_Q 0.94 0.00
50_G 164_L 0.93 0.00
84_G 127_F 0.93 0.00
157_D 138_S 0.92 0.00
6_T 165_K 0.92 0.00
18_F 69_F 0.92 0.00
145_K 17_T 0.92 0.00
132_R 64_L 0.92 0.00
6_T 190_V 0.92 0.00
66_G 192_A 0.92 0.00
80_M 8_L 0.92 0.00
116_A 9_L 0.92 0.00
4_F 137_I 0.92 0.00
58_A 161_F 0.92 0.00
176_Q 142_A 0.92 0.00
59_E 114_L 0.91 0.00
82_E 43_V 0.91 0.00
19_A 85_I 0.91 0.00
24_S 47_N 0.90 0.00
154_R 95_L 0.90 0.00
75_N 46_P 0.90 0.00
6_T 172_E 0.90 0.00
115_A 8_L 0.90 0.00
73_G 194_D 0.89 0.00
7_V 52_R 0.89 0.00
164_V 131_P 0.89 0.00
26_E 182_V 0.89 0.00
89_L 33_K 0.89 0.00
82_E 54_I 0.88 0.00
25_V 148_V 0.88 0.00
3_E 141_F 0.88 0.00
165_R 82_P 0.88 0.00
98_H 113_K 0.88 0.00
44_M 102_V 0.88 0.00
144_D 159_G 0.88 0.00
28_W 190_V 0.87 0.00
100_R 107_Q 0.87 0.00
96_F 72_V 0.87 0.00
109_V 142_A 0.87 0.00
119_E 14_I 0.87 0.00
91_D 127_F 0.86 0.00
120_Q 179_E 0.86 0.00
32_L 52_R 0.86 0.00
65_C 89_E 0.86 0.00
43_Q 17_T 0.86 0.00
50_G 70_I 0.86 0.00
155_A 98_L 0.86 0.00
99_L 92_F 0.86 0.00
67_E 76_P 0.86 0.00
147_V 190_V 0.86 0.00
15_A 143_S 0.86 0.00
32_L 95_L 0.85 0.00
21_E 106_R 0.85 0.00
19_A 24_L 0.85 0.00
77_I 61_A 0.85 0.00
44_M 68_R 0.85 0.00
136_K 161_F 0.85 0.00
13_K 99_G 0.85 0.00
104_E 27_Y 0.85 0.00
48_L 99_G 0.84 0.00
18_F 92_F 0.84 0.00
134_S 86_V 0.84 0.00
107_A 81_I 0.84 0.00
117_L 144_L 0.84 0.00
40_K 202_I 0.84 0.00
157_D 49_M 0.84 0.00
167_R 110_H 0.84 0.00
98_H 194_D 0.84 0.00
110_D 202_I 0.83 0.00
10_P 38_Y 0.83 0.00
158_M 127_F 0.83 0.00
172_A 30_M 0.83 0.00
104_E 141_F 0.83 0.00
167_R 58_I 0.83 0.00
148_M 158_Q 0.83 0.00
41_N 128_P 0.83 0.00
123_A 85_I 0.83 0.00
131_K 22_N 0.83 0.00
100_R 141_F 0.83 0.00
134_S 180_Y 0.83 0.00
158_M 144_L 0.83 0.00
27_R 137_I 0.83 0.00
56_T 118_E 0.82 0.00
87_N 93_T 0.82 0.00
31_M 92_F 0.82 0.00
60_S 31_L 0.82 0.00
127_A 142_A 0.82 0.00
69_L 196_E 0.82 0.00
166_G 37_A 0.82 0.00
133_L 36_K 0.82 0.00
118_S 23_Q 0.82 0.00
109_V 48_E 0.82 0.00
62_I 162_Y 0.82 0.00
57_L 58_I 0.81 0.00
114_A 112_L 0.81 0.00
105_A 86_V 0.81 0.00
80_M 169_P 0.81 0.00
137_V 186_V 0.81 0.00
132_R 49_M 0.81 0.00
130_E 101_R 0.81 0.00
37_E 121_Q 0.81 0.00
147_V 14_I 0.81 0.00
16_F 38_Y 0.81 0.00
147_V 117_I 0.81 0.00
27_R 136_V 0.81 0.00
115_A 101_R 0.81 0.00
131_K 162_Y 0.81 0.00
175_L 59_V 0.81 0.00
6_T 38_Y 0.81 0.00
54_P 137_I 0.81 0.00
96_F 160_R 0.81 0.00
91_D 16_L 0.80 0.00
139_L 150_W 0.80 0.00
83_N 38_Y 0.80 0.00
99_L 27_Y 0.80 0.00
10_P 78_L 0.80 0.00
113_S 170_E 0.80 0.00
149_A 148_V 0.80 0.00
172_A 26_A 0.80 0.00
100_R 109_Q 0.80 0.00
99_L 148_V 0.80 0.00
155_A 160_R 0.80 0.00
6_T 116_N 0.80 0.00
123_A 19_H 0.80 0.00
116_A 63_Y 0.80 0.00
38_V 122_S 0.80 0.00
28_W 80_G 0.80 0.00
92_V 150_W 0.79 0.00
137_V 74_T 0.79 0.00
40_K 23_Q 0.79 0.00
92_V 101_R 0.79 0.00
10_P 116_N 0.79 0.00
154_R 103_R 0.79 0.00
52_L 171_D 0.79 0.00
100_R 138_S 0.79 0.00
120_Q 11_D 0.79 0.00
15_A 146_D 0.79 0.00
177_S 108_V 0.79 0.00
16_F 80_G 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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