May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ATP6 - ATPD
UniProt: P0AB98 - P0ABA4
Length: 448
Sequences: 792
Seq/Len: 1.80
I_Prob: 0.11

ATP6 - ATP synthase subunit a
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATP6
ATPD - ATP synthase subunit delta
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
154_A 148_M 1.38 0.11
47_F 119_E 1.31 0.09
149_V 76_L 1.16 0.06
17_N 57_L 1.12 0.05
113_F 28_W 1.12 0.05
74_K 17_D 1.11 0.05
111_W 89_L 1.06 0.04
2_A 44_M 1.06 0.04
254_F 120_Q 1.05 0.04
224_L 132_R 1.03 0.04
51_V 70_D 1.02 0.04
244_F 131_K 1.02 0.04
251_L 72_N 1.00 0.04
248_I 147_V 0.98 0.03
217_A 121_Q 0.97 0.03
211_L 159_V 0.96 0.03
66_K 144_D 0.95 0.03
215_M 75_N 0.95 0.03
112_V 109_V 0.94 0.03
122_P 129_M 0.93 0.03
54_L 30_D 0.92 0.03
114_L 143_I 0.91 0.03
9_Q 177_S 0.91 0.03
221_I 77_I 0.91 0.03
82_V 23_Q 0.91 0.03
244_F 128_A 0.91 0.03
86_V 65_C 0.90 0.03
88_G 120_Q 0.90 0.02
212_F 114_A 0.89 0.02
56_F 118_S 0.89 0.02
191_V 67_E 0.88 0.02
198_V 99_L 0.87 0.02
42_N 147_V 0.87 0.02
10_D 177_S 0.86 0.02
81_L 136_K 0.86 0.02
254_F 91_D 0.86 0.02
144_S 76_L 0.86 0.02
58_V 25_V 0.85 0.02
258_V 113_S 0.85 0.02
221_I 137_V 0.85 0.02
255_I 145_K 0.85 0.02
91_K 45_A 0.84 0.02
62_S 140_N 0.84 0.02
145_A 159_V 0.84 0.02
121_L 24_S 0.84 0.02
3_S 177_S 0.83 0.02
260_T 41_N 0.82 0.02
73_G 147_V 0.82 0.02
257_M 86_L 0.82 0.02
113_F 166_G 0.82 0.02
155_L 121_Q 0.82 0.02
168_M 64_V 0.81 0.02
118_M 172_A 0.81 0.02
239_V 120_Q 0.81 0.02
213_G 160_I 0.81 0.02
201_L 159_V 0.81 0.02
109_F 76_L 0.81 0.02
109_F 160_I 0.81 0.02
205_V 149_A 0.81 0.02
25_T 145_K 0.81 0.02
246_I 163_S 0.81 0.02
199_S 167_R 0.81 0.02
216_Y 128_A 0.80 0.02
206_S 83_N 0.80 0.02
220_L 72_N 0.80 0.02
166_I 30_D 0.80 0.02
2_A 176_Q 0.80 0.02
198_V 25_V 0.79 0.02
66_K 134_S 0.79 0.02
47_F 137_V 0.79 0.02
46_M 147_V 0.79 0.02
211_L 19_A 0.79 0.02
153_M 55_E 0.78 0.02
149_V 153_I 0.78 0.02
187_A 123_A 0.78 0.01
150_T 12_A 0.77 0.01
166_I 145_K 0.77 0.01
234_Q 169_E 0.77 0.01
118_M 15_A 0.77 0.01
157_V 77_I 0.77 0.01
270_E 77_I 0.77 0.01
269_E 155_A 0.77 0.01
166_I 43_Q 0.77 0.01
255_I 117_L 0.76 0.01
69_S 93_L 0.76 0.01
92_D 55_E 0.76 0.01
190_P 85_R 0.76 0.01
153_M 20_V 0.76 0.01
83_I 133_L 0.76 0.01
217_A 156_G 0.76 0.01
231_W 26_E 0.76 0.01
169_K 147_V 0.76 0.01
54_L 123_A 0.76 0.01
254_F 80_M 0.76 0.01
120_L 68_Q 0.76 0.01
153_M 23_Q 0.75 0.01
207_L 175_L 0.75 0.01
220_L 14_A 0.75 0.01
172_G 66_G 0.75 0.01
145_A 7_V 0.75 0.01
52_L 128_A 0.75 0.01
90_V 159_V 0.75 0.01
88_G 89_L 0.75 0.01
65_K 131_K 0.75 0.01
148_N 126_S 0.75 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1259 seconds.