May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PHOL - YBEY
UniProt: P0A9K3 - P0A898
Length: 501
Sequences: 837
Seq/Len: 1.80
I_Prob: 0.11

PHOL - PhoH-like protein
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PHOL
YBEY - Endoribonuclease YbeY
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBEY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
137_I 86_L 1.38 0.11
67_Y 66_N 1.36 0.11
39_E 88_I 1.23 0.07
154_A 71_P 1.14 0.06
67_Y 96_E 1.12 0.05
317_V 134_E 1.10 0.05
239_I 79_E 1.08 0.05
118_I 83_L 1.07 0.04
67_Y 107_H 1.05 0.04
308_V 141_M 1.01 0.04
239_I 112_V 0.99 0.03
115_R 102_K 0.99 0.03
193_D 85_D 0.98 0.03
326_A 129_E 0.97 0.03
32_L 26_T 0.97 0.03
212_V 45_V 0.97 0.03
223_V 81_S 0.96 0.03
267_I 31_V 0.96 0.03
40_I 76_P 0.96 0.03
208_G 110_H 0.96 0.03
208_G 59_R 0.94 0.03
155_A 89_C 0.94 0.03
168_I 132_E 0.93 0.03
239_I 19_P 0.93 0.03
103_P 41_V 0.93 0.03
277_P 88_I 0.92 0.03
187_D 109_A 0.91 0.03
156_A 87_V 0.90 0.02
192_V 130_A 0.89 0.02
322_A 95_K 0.89 0.02
64_R 86_L 0.89 0.02
210_E 25_Q 0.88 0.02
262_N 28_L 0.88 0.02
168_I 127_D 0.88 0.02
236_D 93_V 0.87 0.02
48_K 86_L 0.86 0.02
140_G 140_I 0.85 0.02
115_R 66_N 0.85 0.02
151_L 47_D 0.84 0.02
30_K 125_I 0.84 0.02
78_Q 95_K 0.83 0.02
115_R 107_H 0.83 0.02
293_D 21_E 0.82 0.02
45_N 57_T 0.82 0.02
165_I 111_M 0.82 0.02
261_F 46_V 0.82 0.02
250_E 87_V 0.82 0.02
208_G 109_A 0.81 0.02
192_V 43_I 0.81 0.02
203_L 96_E 0.81 0.02
315_R 131_E 0.81 0.02
84_Q 115_G 0.81 0.02
193_D 111_M 0.81 0.02
10_L 87_V 0.81 0.02
210_E 82_L 0.81 0.02
235_N 110_H 0.81 0.02
190_Q 115_G 0.80 0.02
205_E 74_V 0.80 0.02
22_C 27_W 0.80 0.02
294_V 52_H 0.79 0.02
121_R 96_E 0.79 0.02
31_Q 24_F 0.79 0.02
31_Q 43_I 0.79 0.02
218_R 59_R 0.79 0.02
62_I 92_V 0.78 0.02
212_V 112_V 0.78 0.02
277_P 40_E 0.78 0.01
123_P 28_L 0.78 0.01
6_R 5_I 0.77 0.01
259_I 83_L 0.77 0.01
85_I 83_L 0.77 0.01
15_N 57_T 0.77 0.01
299_F 54_L 0.77 0.01
315_R 49_A 0.77 0.01
85_I 122_Y 0.76 0.01
296_E 127_D 0.76 0.01
192_V 28_L 0.76 0.01
83_E 115_G 0.76 0.01
228_Y 89_C 0.76 0.01
210_E 18_L 0.76 0.01
244_S 111_M 0.76 0.01
115_R 96_E 0.76 0.01
207_L 108_W 0.76 0.01
63_L 25_Q 0.76 0.01
137_I 136_L 0.75 0.01
261_F 137_E 0.75 0.01
188_L 132_E 0.75 0.01
274_I 147_E 0.75 0.01
272_T 78_M 0.75 0.01
212_V 71_P 0.75 0.01
268_T 32_I 0.75 0.01
299_F 28_L 0.75 0.01
290_V 87_V 0.74 0.01
290_V 91_Q 0.74 0.01
307_V 124_H 0.74 0.01
223_V 14_D 0.74 0.01
28_N 91_Q 0.74 0.01
324_E 26_T 0.74 0.01
162_R 131_E 0.74 0.01
61_D 128_D 0.74 0.01
63_L 126_E 0.74 0.01
287_A 63_K 0.74 0.01
119_K 137_E 0.74 0.01
165_I 76_P 0.73 0.01
235_N 90_R 0.73 0.01
127_Q 33_P 0.73 0.01
118_I 82_L 0.73 0.01
169_L 111_M 0.73 0.01
55_C 139_E 0.73 0.01
109_V 83_L 0.73 0.01
183_F 135_A 0.73 0.01
228_Y 10_L 0.73 0.01
294_V 147_E 0.73 0.01
316_I 5_I 0.73 0.01
6_R 151_I 0.73 0.01
323_W 52_H 0.73 0.01
286_H 137_E 0.73 0.01
161_E 66_N 0.73 0.01
10_L 71_P 0.72 0.01
121_R 102_K 0.72 0.01
12_P 44_R 0.72 0.01
102_V 31_V 0.72 0.01
293_D 56_L 0.72 0.01
121_R 107_H 0.72 0.01
141_V 140_I 0.72 0.01
274_I 24_F 0.72 0.01
7_E 5_I 0.72 0.01
57_T 98_Q 0.72 0.01
160_L 77_G 0.72 0.01
237_A 97_A 0.72 0.01
22_C 19_P 0.71 0.01
40_I 47_D 0.71 0.01
114_K 28_L 0.71 0.01
224_A 111_M 0.71 0.01
8_I 101_G 0.71 0.01
265_A 109_A 0.71 0.01
153_V 96_E 0.71 0.01
312_V 32_I 0.71 0.01
129_I 29_N 0.71 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0805 seconds.