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OPENSEQ.org

TPX - YPJD
UniProt: P0A862 - P64432
Length: 431
Sequences: 308
Seq/Len: 0.78
I_Prob: 0.00

TPX - Thiol peroxidase
Paralog alert: 0.86 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: AHPC BCP DSBE TPX
YPJD - Inner membrane protein YpjD
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YPJD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
100_L 33_M 1.44 0.00
43_F 146_L 1.34 0.00
120_V 54_L 1.32 0.00
118_Y 105_A 1.18 0.00
84_S 259_Q 1.18 0.00
38_V 37_S 1.17 0.00
26_Q 213_S 1.17 0.00
35_L 249_T 1.15 0.00
31_V 146_L 1.12 0.00
59_G 147_Q 1.08 0.00
74_E 46_A 1.08 0.00
102_N 92_L 1.07 0.00
132_A 250_L 1.06 0.00
57_D 185_V 1.06 0.00
85_A 120_A 1.05 0.00
87_L 133_F 1.05 0.00
19_P 20_V 1.03 0.00
35_L 81_T 1.01 0.00
66_R 131_S 1.01 0.00
136_V 95_I 1.01 0.00
103_V 35_I 1.00 0.00
113_E 96_V 0.99 0.00
108_T 128_I 0.99 0.00
142_D 241_N 0.98 0.00
77_N 47_I 0.98 0.00
20_Q 37_S 0.96 0.00
138_I 172_I 0.96 0.00
164_A 246_V 0.96 0.00
147_S 187_L 0.95 0.00
142_D 212_L 0.95 0.00
85_A 134_S 0.95 0.00
88_P 37_S 0.94 0.00
144_V 143_L 0.94 0.00
137_V 235_R 0.94 0.00
88_P 140_I 0.93 0.00
69_N 235_R 0.93 0.00
44_A 175_K 0.93 0.00
162_A 166_M 0.93 0.00
81_L 213_S 0.93 0.00
154_T 148_L 0.93 0.00
159_Y 62_N 0.92 0.00
66_R 215_V 0.92 0.00
74_E 44_C 0.92 0.00
36_S 41_A 0.91 0.00
25_A 255_S 0.91 0.00
59_G 78_T 0.91 0.00
91_Q 59_S 0.91 0.00
92_S 43_V 0.91 0.00
79_V 150_W 0.91 0.00
26_Q 72_V 0.91 0.00
119_G 134_S 0.91 0.00
144_V 33_M 0.90 0.00
163_L 83_V 0.89 0.00
27_T 151_I 0.88 0.00
142_D 188_T 0.88 0.00
93_R 212_L 0.88 0.00
84_S 141_A 0.88 0.00
50_L 32_R 0.88 0.00
28_F 219_V 0.88 0.00
55_S 185_V 0.87 0.00
26_Q 148_L 0.87 0.00
70_Q 150_W 0.87 0.00
138_I 137_T 0.87 0.00
43_F 250_L 0.87 0.00
136_V 249_T 0.87 0.00
151_D 80_M 0.86 0.00
83_I 35_I 0.86 0.00
45_G 246_V 0.86 0.00
26_Q 130_L 0.86 0.00
140_E 146_L 0.85 0.00
46_K 43_V 0.85 0.00
68_F 60_G 0.85 0.00
79_V 134_S 0.85 0.00
111_N 44_C 0.85 0.00
71_L 236_R 0.85 0.00
116_Q 39_V 0.85 0.00
77_N 235_R 0.84 0.00
161_A 136_A 0.84 0.00
50_L 141_A 0.84 0.00
163_L 75_M 0.84 0.00
96_G 162_F 0.84 0.00
90_A 57_G 0.84 0.00
103_V 78_T 0.83 0.00
75_I 84_A 0.83 0.00
27_T 140_I 0.83 0.00
81_L 107_A 0.83 0.00
63_A 40_I 0.83 0.00
88_P 169_L 0.83 0.00
28_F 171_S 0.83 0.00
57_D 173_E 0.83 0.00
46_K 163_N 0.83 0.00
45_G 234_G 0.82 0.00
92_S 44_C 0.82 0.00
36_S 246_V 0.82 0.00
69_N 169_L 0.82 0.00
89_F 43_V 0.82 0.00
114_F 252_Y 0.81 0.00
45_G 38_A 0.81 0.00
144_V 258_V 0.81 0.00
79_V 89_G 0.81 0.00
79_V 94_P 0.81 0.00
24_K 168_P 0.80 0.00
87_L 70_S 0.80 0.00
43_F 177_F 0.80 0.00
39_T 150_W 0.80 0.00
41_G 242_V 0.80 0.00
40_L 98_A 0.80 0.00
158_D 125_L 0.80 0.00
60_V 229_H 0.80 0.00
40_L 224_L 0.79 0.00
31_V 40_I 0.79 0.00
50_L 130_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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