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OPENSEQ.org

RPOA - RS5
UniProt: P0A7Z4 - P0A7W1
Length: 496
Sequences: 723
Seq/Len: 1.49
I_Prob: 0.13

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS5 - 30S ribosomal protein S5
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS5
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
113_A 88_V 1.48 0.13
156_S 10_E 1.40 0.10
126_P 96_M 1.36 0.09
124_V 149_S 1.25 0.07
196_T 132_N 1.24 0.07
289_L 58_A 1.13 0.05
171_L 123_V 1.11 0.04
52_P 134_I 1.09 0.04
68_Y 30_I 1.08 0.04
132_H 105_I 1.08 0.04
217_I 142_D 1.07 0.04
173_V 63_A 1.05 0.04
100_L 36_L 1.05 0.04
202_V 123_V 1.03 0.03
298_K 109_G 1.02 0.03
220_A 150_P 1.02 0.03
63_G 71_M 1.01 0.03
93_Q 143_G 1.01 0.03
292_T 57_P 1.00 0.03
197_D 83_H 1.00 0.03
180_V 121_H 1.00 0.03
16_I 91_G 1.00 0.03
178_S 32_S 0.99 0.03
289_L 92_S 0.99 0.03
226_E 123_V 0.98 0.03
173_V 68_R 0.97 0.03
125_K 29_R 0.97 0.03
128_H 95_F 0.95 0.03
24_A 82_Q 0.94 0.02
295_L 138_R 0.94 0.02
131_C 11_L 0.94 0.02
178_S 36_L 0.93 0.02
264_V 25_V 0.93 0.02
150_R 29_R 0.92 0.02
299_S 23_K 0.92 0.02
56_V 53_A 0.92 0.02
138_A 91_G 0.90 0.02
143_R 87_G 0.90 0.02
111_T 46_V 0.90 0.02
175_A 92_S 0.90 0.02
184_A 63_A 0.89 0.02
131_C 106_I 0.89 0.02
72_E 37_T 0.89 0.02
269_C 26_K 0.89 0.02
120_D 164_I 0.89 0.02
289_L 61_Q 0.88 0.02
204_E 79_G 0.88 0.02
210_T 56_V 0.88 0.02
169_G 137_V 0.88 0.02
252_I 143_G 0.88 0.02
299_S 112_R 0.87 0.02
104_K 137_V 0.87 0.02
196_T 103_T 0.87 0.02
59_V 43_N 0.86 0.02
59_V 87_G 0.86 0.02
257_V 38_V 0.86 0.02
260_L 91_G 0.86 0.02
131_C 83_H 0.86 0.02
138_A 24_T 0.85 0.02
35_F 43_N 0.85 0.02
95_K 153_V 0.85 0.02
275_I 105_I 0.85 0.02
327_A 118_A 0.83 0.02
42_A 36_L 0.83 0.02
274_A 95_F 0.83 0.02
294_N 26_K 0.83 0.02
200_K 80_T 0.82 0.02
83_L 76_L 0.82 0.01
113_A 75_A 0.82 0.01
49_S 67_A 0.81 0.01
61_I 74_V 0.81 0.01
115_I 140_T 0.81 0.01
130_I 78_N 0.81 0.01
131_C 91_G 0.81 0.01
157_T 63_A 0.81 0.01
53_G 90_T 0.81 0.01
184_A 61_Q 0.81 0.01
43_L 114_V 0.81 0.01
147_Q 10_E 0.81 0.01
180_V 97_Q 0.80 0.01
193_E 61_Q 0.80 0.01
8_F 66_K 0.80 0.01
135_D 132_N 0.80 0.01
127_Q 73_N 0.80 0.01
80_E 132_N 0.80 0.01
50_S 80_T 0.80 0.01
79_L 29_R 0.79 0.01
81_I 92_S 0.79 0.01
113_A 155_A 0.79 0.01
203_I 69_R 0.79 0.01
90_V 22_S 0.79 0.01
297_K 31_F 0.79 0.01
142_M 87_G 0.78 0.01
199_D 71_M 0.78 0.01
275_I 14_K 0.78 0.01
126_P 73_N 0.78 0.01
224_L 148_N 0.78 0.01
92_V 88_V 0.78 0.01
91_R 123_V 0.78 0.01
196_T 138_R 0.78 0.01
193_E 110_A 0.77 0.01
280_D 32_S 0.77 0.01
308_A 10_E 0.77 0.01
273_E 61_Q 0.77 0.01
62_D 125_A 0.77 0.01
152_Y 69_R 0.77 0.01
35_F 9_G 0.77 0.01
102_L 74_V 0.76 0.01
129_V 14_K 0.76 0.01
54_C 140_T 0.76 0.01
264_V 26_K 0.76 0.01
47_L 63_A 0.76 0.01
104_K 54_R 0.76 0.01
220_A 101_E 0.76 0.01
303_I 101_E 0.76 0.01
152_Y 108_G 0.76 0.01
177_Y 24_T 0.76 0.01
8_F 91_G 0.76 0.01
126_P 159_K 0.76 0.01
276_H 87_G 0.76 0.01
278_I 149_S 0.75 0.01
8_F 22_S 0.75 0.01
113_A 41_D 0.75 0.01
14_V 105_I 0.75 0.01
90_V 120_V 0.75 0.01
274_A 36_L 0.75 0.01
121_V 25_V 0.75 0.01
213_P 91_G 0.75 0.01
53_G 108_G 0.74 0.01
59_V 74_V 0.74 0.01
90_V 45_R 0.74 0.01
213_P 159_K 0.74 0.01
204_E 68_R 0.74 0.01
271_K 109_G 0.74 0.01
257_V 143_G 0.74 0.01
122_E 13_E 0.74 0.01
309_S 81_L 0.74 0.01
202_V 89_H 0.74 0.01
311_G 142_D 0.73 0.01
205_M 74_V 0.73 0.01
107_I 48_F 0.73 0.01
320_N 37_T 0.73 0.01
72_E 96_M 0.73 0.01
136_E 137_V 0.73 0.01
27_T 101_E 0.73 0.01
181_E 68_R 0.73 0.01
184_A 69_R 0.72 0.01
154_P 29_R 0.72 0.01
166_R 13_E 0.72 0.01
58_E 63_A 0.72 0.01
196_T 106_I 0.72 0.01
140_I 146_N 0.72 0.01
146_V 71_M 0.72 0.01
263_T 30_I 0.72 0.01
168_I 19_N 0.72 0.01
80_E 30_I 0.72 0.01
121_V 72_I 0.72 0.01
230_A 75_A 0.72 0.01
119_G 10_E 0.72 0.01
122_E 149_S 0.72 0.01
58_E 115_L 0.72 0.01
277_Y 83_H 0.72 0.01
163_E 162_E 0.72 0.01
212_D 96_M 0.72 0.01
21_S 105_I 0.71 0.01
197_D 100_S 0.71 0.01
66_H 69_R 0.71 0.01
114_D 137_V 0.71 0.01
313_S 110_A 0.71 0.01
293_P 82_Q 0.70 0.01
182_R 72_I 0.70 0.01
70_T 82_Q 0.70 0.01
274_A 122_N 0.70 0.01
49_S 120_V 0.70 0.01
259_D 61_Q 0.70 0.01
164_D 95_F 0.70 0.01
156_S 16_I 0.70 0.01
173_V 142_D 0.70 0.01
171_L 103_T 0.70 0.01
308_A 16_I 0.70 0.01
285_T 68_R 0.70 0.01
165_E 53_A 0.70 0.01
131_C 13_E 0.70 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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