May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

FABZ - PYRH
UniProt: P0A6Q6 - P0A7E9
Length: 392
Sequences: 337
Seq/Len: 0.89
I_Prob: 0.10

FABZ - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
Paralog alert: 0.18 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: FABA FABZ
PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
136_K 159_D 1.68 0.10
137_V 188_T 1.57 0.07
34_E 41_I 1.13 0.02
130_V 159_D 1.12 0.02
102_K 234_K 1.10 0.02
99_A 179_P 1.10 0.02
127_F 209_R 1.09 0.02
135_G 178_D 1.08 0.02
28_R 65_G 1.08 0.02
135_G 50_Q 1.05 0.01
97_D 138_T 1.05 0.01
45_S 185_E 1.04 0.01
92_Y 36_R 1.03 0.01
66_I 133_I 1.03 0.01
60_I 231_M 1.03 0.01
140_E 220_M 1.03 0.01
121_R 229_V 1.01 0.01
104_P 132_V 1.01 0.01
102_K 215_I 0.98 0.01
142_T 187_L 0.98 0.01
111_M 41_I 0.98 0.01
141_A 179_P 0.97 0.01
65_L 29_I 0.97 0.01
126_R 134_L 0.96 0.01
129_G 198_K 0.94 0.01
45_S 22_Q 0.93 0.01
129_G 127_R 0.92 0.01
45_S 33_I 0.91 0.01
121_R 34_L 0.91 0.01
73_A 40_E 0.90 0.01
44_V 103_R 0.89 0.01
79_F 158_A 0.89 0.01
99_A 67_A 0.89 0.01
111_M 100_V 0.89 0.01
61_F 22_Q 0.88 0.01
79_F 166_K 0.87 0.01
115_V 67_A 0.86 0.01
38_L 114_C 0.86 0.01
23_F 131_V 0.86 0.01
29_V 216_R 0.85 0.01
138_V 172_T 0.85 0.01
93_F 136_A 0.85 0.01
49_P 36_R 0.85 0.01
104_P 13_L 0.84 0.01
99_A 43_E 0.84 0.01
119_K 71_M 0.84 0.01
67_L 157_E 0.84 0.01
74_T 36_R 0.83 0.01
129_G 130_R 0.83 0.01
74_T 65_G 0.82 0.01
40_A 180_T 0.82 0.01
110_Q 238_L 0.82 0.01
125_T 154_I 0.82 0.01
92_Y 40_E 0.82 0.01
84_K 182_T 0.82 0.01
31_D 230_V 0.82 0.01
124_L 134_L 0.81 0.01
102_K 193_L 0.81 0.01
124_L 10_K 0.81 0.01
74_T 209_R 0.81 0.01
103_R 117_Y 0.81 0.01
137_V 195_K 0.81 0.01
139_C 231_M 0.81 0.01
8_L 50_Q 0.80 0.01
66_I 55_I 0.80 0.01
93_F 219_N 0.80 0.01
145_C 211_H 0.80 0.01
98_E 182_T 0.80 0.01
23_F 94_A 0.80 0.01
111_M 176_A 0.79 0.01
125_T 229_V 0.79 0.01
70_M 12_I 0.79 0.01
73_A 216_R 0.79 0.01
75_G 147_S 0.79 0.01
94_A 216_R 0.78 0.01
120_T 147_S 0.78 0.01
100_R 142_F 0.78 0.01
58_K 9_Y 0.78 0.01
46_V 40_E 0.78 0.01
60_I 112_G 0.78 0.01
40_A 210_D 0.78 0.01
124_L 131_V 0.78 0.01
92_Y 188_T 0.78 0.01
125_T 171_F 0.77 0.01
10_I 208_A 0.77 0.01
29_V 86_M 0.77 0.01
95_G 235_E 0.77 0.01
132_L 53_V 0.77 0.01
12_E 26_G 0.77 0.01
145_C 234_K 0.77 0.01
139_C 75_V 0.76 0.01
45_S 117_Y 0.76 0.01
139_C 188_T 0.76 0.01
97_D 75_V 0.76 0.01
13_I 220_M 0.75 0.01
136_K 213_L 0.75 0.01
25_L 215_I 0.75 0.01
143_M 131_V 0.74 0.01
142_T 185_E 0.74 0.00
77_L 189_Y 0.74 0.00
57_G 230_V 0.74 0.00
80_K 237_T 0.74 0.00
15_E 50_Q 0.74 0.00
34_E 118_S 0.74 0.00
110_Q 203_A 0.74 0.00
13_I 218_F 0.74 0.00
130_V 179_P 0.73 0.00
50_F 29_I 0.73 0.00
109_D 236_G 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0366 seconds.