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OPENSEQ.org

INSO2 - Putative transposase InsO for insertion sequence element IS911B
UniProt: Q47718 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:
Length: 198 (187)
Sequences: 3280
Seq/Len: 17.54

INSO2
Paralog alert: 0.68 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: INSD1 INSD2 INSD3 INSD4 INSD5 INSD6 INSD8 INSF1 INSF2 INSF3 INSF4 INSF5 INSK INSO1 INSO2 YAGA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
32_R 74_L 3.233 1.00
35_V 51_I 3.066 1.00
108_E 111_Q 2.704 1.00
34_Q 58_R 2.548 1.00
119_Y 126_W 2.423 1.00
110_N 113_W 2.376 1.00
32_R 73_E 2.294 1.00
28_R 66_L 2.266 1.00
38_L 51_I 2.252 1.00
63_G 66_L 2.249 1.00
46_A 50_S 2.1 1.00
144_A 156_K 2.096 1.00
34_Q 37_E 2.082 1.00
142_G 157_A 2.045 1.00
106_V 112_V 2.031 1.00
38_L 54_M 2.02 1.00
159_E 189_Y 2.017 1.00
48_A 68_G 1.996 1.00
62_M 67_A 1.991 1.00
115_G 173_F 1.921 1.00
52_A 56_T 1.919 1.00
114_C 135_L 1.906 1.00
144_A 160_M 1.875 1.00
113_W 171_V 1.846 1.00
115_G 175_A 1.798 1.00
39_H 76_L 1.776 1.00
151_S 155_M 1.772 1.00
129_L 143_W 1.759 1.00
107_T 111_Q 1.743 1.00
32_R 70_L 1.737 1.00
100_L 112_V 1.712 1.00
113_W 161_A 1.676 1.00
31_L 62_M 1.666 1.00
122_T 125_R 1.663 1.00
66_L 69_R 1.652 1.00
130_A 181_I 1.636 1.00
133_L 140_P 1.596 1.00
34_Q 60_Y 1.563 1.00
112_V 135_L 1.561 1.00
48_A 64_R 1.558 1.00
110_N 165_R 1.507 1.00
56_T 61_Q 1.471 1.00
103_Q 112_V 1.463 1.00
28_R 69_R 1.459 1.00
120_I 129_L 1.458 1.00
54_M 58_R 1.441 1.00
115_G 130_A 1.439 1.00
70_L 74_L 1.436 1.00
24_P 28_R 1.427 1.00
146_S 150_D 1.385 0.99
54_M 57_R 1.352 0.99
179_V 182_R 1.339 0.99
130_A 157_A 1.328 0.99
146_S 153_L 1.307 0.99
37_E 41_I 1.293 0.99
88_R 91_H 1.272 0.99
68_G 72_K 1.265 0.99
183_A 186_S 1.264 0.99
13_S 16_L 1.263 0.99
182_R 186_S 1.256 0.99
52_A 67_A 1.256 0.99
52_A 64_R 1.256 0.99
155_M 159_E 1.253 0.99
149_P 179_V 1.247 0.99
42_S 45_S 1.243 0.98
113_W 132_V 1.221 0.98
179_V 183_A 1.211 0.98
39_H 44_G 1.189 0.98
17_R 20_R 1.146 0.97
36_L 74_L 1.122 0.97
121_W 126_W 1.111 0.96
100_L 135_L 1.104 0.96
130_A 153_L 1.099 0.96
149_P 180_I 1.081 0.95
119_Y 128_Y 1.08 0.95
131_V 140_P 1.072 0.95
117_V 180_I 1.071 0.95
27_R 66_L 1.061 0.95
184_G 188_S 1.047 0.94
90_G 93_H 1.046 0.94
50_S 54_M 1.045 0.94
63_G 69_R 1.043 0.94
36_L 40_G 1.037 0.94
28_R 31_L 1.034 0.94
49_R 68_G 1.03 0.94
188_S 192_D 1.012 0.93
173_F 186_S 1.004 0.93
186_S 190_C 1.004 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4fcyA20.979899.90.567Contact Map0.581
3hotA20.959699.90.59Contact Map0.592
1bcoA10.525399.80.65Contact Map0.646
3oymA20.924299.80.663Contact Map0.524
4fw1A20.479899.70.686Contact Map0.733
1cxqA10.484899.60.697Contact Map0.471
3av9A20.550599.60.706Contact Map0.468
2x78A30.489999.60.713Contact Map0.6
4fw2A20.722299.60.716Contact Map0.644
1ex4A20.449599.60.717Contact Map0.509

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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