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OPENSEQ.org

RZPD - Putative Rz endopeptidase from lambdoid prophage DLP12
UniProt: P75719 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13636
Length: 153 (153)
Sequences: 239
Seq/Len: 1.56

RZPD
Paralog alert: 0.55 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RZPD RZPR
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
112_D 143_G 2.165 0.99
118_R 124_E 1.788 0.96
8_I 14_C 1.782 0.96
8_I 13_I 1.736 0.95
20_S 23_V 1.707 0.94
5_T 9_S 1.653 0.93
7_I 14_C 1.65 0.93
80_D 84_D 1.567 0.90
9_S 16_I 1.566 0.90
9_S 13_I 1.505 0.87
9_S 15_I 1.499 0.87
127_Y 130_L 1.498 0.87
137_M 141_L 1.484 0.86
146_K 150_E 1.467 0.85
109_S 143_G 1.463 0.85
6_A 17_V 1.448 0.84
32_A 35_V 1.446 0.84
35_V 42_R 1.427 0.83
138_Q 141_L 1.402 0.82
6_A 10_A 1.399 0.81
40_N 43_E 1.38 0.80
121_D 133_R 1.37 0.79
6_A 14_C 1.314 0.75
81_A 84_D 1.303 0.74
7_I 10_A 1.297 0.74
80_D 91_R 1.281 0.73
35_V 43_E 1.28 0.73
12_I 15_I 1.279 0.73
6_A 13_I 1.275 0.72
39_K 42_R 1.27 0.72
2_S 7_I 1.238 0.69
7_I 12_I 1.222 0.68
10_A 15_I 1.219 0.67
137_M 140_Q 1.216 0.67
50_A 56_M 1.215 0.67
16_I 19_L 1.21 0.66
27_R 31_I 1.208 0.66
77_A 81_A 1.207 0.66
107_T 110_G 1.204 0.66
7_I 23_V 1.194 0.65
10_A 14_C 1.191 0.65
6_A 9_S 1.185 0.64
4_V 15_I 1.18 0.64
14_C 18_S 1.162 0.62
63_A 67_K 1.157 0.61
5_T 14_C 1.157 0.61
10_A 13_I 1.157 0.61
13_I 17_V 1.143 0.60
15_I 18_S 1.137 0.59
15_I 23_V 1.131 0.59
16_I 23_V 1.128 0.58
130_L 140_Q 1.127 0.58
9_S 18_S 1.126 0.58
5_T 21_W 1.126 0.58
10_A 18_S 1.12 0.58
14_C 17_V 1.106 0.56
76_K 81_A 1.105 0.56
44_L 47_A 1.091 0.55
6_A 15_I 1.091 0.55
11_L 15_I 1.091 0.55
125_R 133_R 1.089 0.54
127_Y 140_Q 1.088 0.54
134_L 144_T 1.086 0.54
140_Q 143_G 1.086 0.54
118_R 130_L 1.081 0.54
8_I 21_W 1.078 0.53
15_I 20_S 1.075 0.53
9_S 14_C 1.058 0.51
131_R 134_L 1.057 0.51
6_A 11_L 1.057 0.51
8_I 12_I 1.056 0.51
18_S 23_V 1.051 0.50
11_L 18_S 1.048 0.50
129_T 140_Q 1.046 0.50
13_I 21_W 1.042 0.50
13_I 18_S 1.037 0.49
120_A 134_L 1.034 0.49
7_I 11_L 1.033 0.49
132_E 143_G 1.032 0.48
10_A 17_V 1.031 0.48
124_E 140_Q 1.031 0.48
6_A 12_I 1.029 0.48
2_S 5_T 1.027 0.48
42_R 45_K 1.025 0.48
9_S 17_V 1.022 0.47
11_L 16_I 1.018 0.47
35_V 56_M 1.017 0.47
41_A 56_M 1.008 0.46
11_L 23_V 1.008 0.46
7_I 18_S 1.008 0.46
78_E 83_R 1.006 0.46
4_V 9_S 1.002 0.45
8_I 17_V 1 0.45
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3layA100.790823.90.941Contact Map0.429
3hnwA20.594818.90.944Contact Map0.459
4gipD30.346418.20.944Contact Map0.105
1fzcA20.2288170.945Contact Map0.526
3rvyA20.470616.30.945Contact Map0.242
1wp7A30.287615.80.945Contact Map0.508
3vp9A20.522914.40.946Contact Map0.537
3kpeA10.209214.10.947Contact Map0.565
4bgnA20.588213.50.947Contact Map0.279
3q0xA20.555612.10.948Contact Map0.162

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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