| UniProt: | P65556 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14107 | ||
| Length: | 180 (162) | ||
| Sequences: | 1064 | ||
| Seq/Len: | 6.57 |
| YFCD
Paralog alert: 0.42 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: IDI YFCD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 16_N | 20_E | 6.294 | 1.00 | |
| 46_D | 50_K | 5.461 | 1.00 | |
| 58_E | 65_G | 3.975 | 1.00 | |
| 47_G | 125_H | 3.963 | 1.00 | |
| 55_R | 137_E | 3.18 | 1.00 | |
| 141_L | 146_I | 2.946 | 1.00 | |
| 58_E | 136_S | 2.707 | 1.00 | |
| 19_N | 38_R | 2.449 | 1.00 | |
| 55_R | 136_S | 2.264 | 1.00 | |
| 42_I | 85_A | 2.216 | 1.00 | |
| 45_H | 51_I | 2.146 | 1.00 | |
| 71_A | 89_A | 2.058 | 1.00 | |
| 31_R | 115_V | 1.881 | 1.00 | |
| 88_E | 91_E | 1.828 | 1.00 | |
| 90_E | 96_A | 1.827 | 1.00 | |
| 52_L | 138_V | 1.817 | 1.00 | |
| 74_V | 115_V | 1.749 | 1.00 | |
| 128_F | 138_V | 1.729 | 1.00 | |
| 29_Q | 33_Q | 1.725 | 1.00 | |
| 31_R | 74_V | 1.697 | 1.00 | |
| 15_V | 38_R | 1.67 | 1.00 | |
| 67_L | 139_C | 1.658 | 1.00 | |
| 80_Q | 83_E | 1.646 | 1.00 | |
| 69_A | 72_G | 1.515 | 0.99 | |
| 63_L | 155_P | 1.451 | 0.99 | |
| 104_G | 119_L | 1.45 | 0.99 | |
| 55_R | 65_G | 1.431 | 0.99 | |
| 42_I | 89_A | 1.403 | 0.99 | |
| 24_Q | 77_A | 1.402 | 0.99 | |
| 65_G | 136_S | 1.398 | 0.99 | |
| 95_I | 124_S | 1.377 | 0.98 | |
| 49_G | 123_V | 1.367 | 0.98 | |
| 142_T | 145_E | 1.344 | 0.98 | |
| 93_L | 138_V | 1.326 | 0.98 | |
| 68_D | 72_G | 1.296 | 0.97 | |
| 149_R | 153_F | 1.296 | 0.97 | |
| 39_A | 108_F | 1.295 | 0.97 | |
| 52_L | 140_W | 1.294 | 0.97 | |
| 26_S | 29_Q | 1.29 | 0.97 | |
| 93_L | 135_V | 1.266 | 0.97 | |
| 49_G | 78_D | 1.262 | 0.97 | |
| 84_S | 87_R | 1.24 | 0.96 | |
| 81_L | 118_A | 1.228 | 0.96 | |
| 145_E | 148_A | 1.227 | 0.96 | |
| 79_E | 87_R | 1.219 | 0.96 | |
| 25_A | 30_M | 1.21 | 0.95 | |
| 142_T | 146_I | 1.202 | 0.95 | |
| 146_I | 157_S | 1.199 | 0.95 | |
| 27_R | 88_E | 1.193 | 0.95 | |
| 130_L | 138_V | 1.183 | 0.95 | |
| 40_T | 84_S | 1.139 | 0.93 | |
| 30_M | 74_V | 1.098 | 0.91 | |
| 41_Y | 72_G | 1.094 | 0.91 | |
| 11_W | 24_Q | 1.092 | 0.91 | |
| 129_A | 148_A | 1.091 | 0.91 | |
| 41_Y | 69_A | 1.075 | 0.90 | |
| 44_V | 95_I | 1.059 | 0.89 | |
| 50_K | 142_T | 1.043 | 0.88 | |
| 50_K | 145_E | 1.033 | 0.88 | |
| 41_Y | 68_D | 1.025 | 0.87 | |
| 31_R | 37_H | 1.025 | 0.87 | |
| 75_V | 88_E | 1.019 | 0.87 | |
| 130_L | 135_V | 1.015 | 0.86 | |
| 10_E | 64_P | 1.015 | 0.86 | |
| 66_M | 154_T | 1.011 | 0.86 | |
| 105_Q | 118_A | 1.002 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2dhoA | 1 | 1 | 100 | 0.383 | Contact Map | 0.834 |
| 2pnyA | 1 | 1 | 100 | 0.387 | Contact Map | 0.844 |
| 2fkbA | 3 | 1 | 100 | 0.443 | Contact Map | 0.709 |
| 1hztA | 1 | 0.95 | 100 | 0.477 | Contact Map | 0.793 |
| 3dupA | 2 | 0.9889 | 100 | 0.482 | Contact Map | 0.628 |
| 1q27A | 1 | 0.9222 | 100 | 0.504 | Contact Map | 0.365 |
| 2xsqA | 1 | 0.9611 | 99.8 | 0.619 | Contact Map | 0.418 |
| 3e57A | 2 | 0.9111 | 99.8 | 0.625 | Contact Map | 0.452 |
| 1sjyA | 1 | 0.8278 | 99.8 | 0.644 | Contact Map | 0.632 |
| 3q91A | 4 | 0.9278 | 99.8 | 0.653 | Contact Map | 0.551 |
Sequence Conservation (Image Generated using WebLogo v3)