| UniProt: | P40711 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12354 | ||
| Length: | 140 (136) | ||
| Sequences: | 845 | ||
| Seq/Len: | 6.21 |
| ARFB
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 111_T | 114_S | 4.836 | 1.00 | |
| 29_H | 33_T | 3.953 | 1.00 | |
| 76_E | 86_A | 3.622 | 1.00 | |
| 113_A | 117_R | 3.003 | 1.00 | |
| 125_K | 128_V | 2.809 | 1.00 | |
| 116_E | 120_A | 2.764 | 1.00 | |
| 19_A | 37_I | 2.609 | 1.00 | |
| 17_I | 88_L | 2.459 | 1.00 | |
| 92_V | 96_K | 2.233 | 1.00 | |
| 112_R | 116_E | 2.203 | 1.00 | |
| 120_A | 124_Q | 2.194 | 1.00 | |
| 40_R | 71_V | 2.124 | 1.00 | |
| 119_L | 123_A | 2.101 | 1.00 | |
| 74_A | 87_A | 1.95 | 1.00 | |
| 97_E | 100_T | 1.825 | 1.00 | |
| 42_D | 45_A | 1.802 | 1.00 | |
| 77_Y | 86_A | 1.771 | 1.00 | |
| 20_I | 34_S | 1.748 | 1.00 | |
| 29_H | 79_S | 1.747 | 1.00 | |
| 49_P | 52_Y | 1.683 | 1.00 | |
| 123_A | 126_S | 1.643 | 1.00 | |
| 14_E | 46_S | 1.63 | 1.00 | |
| 41_F | 46_S | 1.604 | 1.00 | |
| 35_T | 80_Q | 1.531 | 0.99 | |
| 110_P | 114_S | 1.493 | 0.99 | |
| 35_T | 79_S | 1.475 | 0.99 | |
| 43_I | 64_I | 1.433 | 0.99 | |
| 89_A | 96_K | 1.399 | 0.98 | |
| 128_V | 131_M | 1.367 | 0.98 | |
| 116_E | 119_L | 1.333 | 0.98 | |
| 42_D | 69_V | 1.319 | 0.97 | |
| 43_I | 56_L | 1.315 | 0.97 | |
| 22_A | 34_S | 1.27 | 0.96 | |
| 22_A | 35_T | 1.258 | 0.96 | |
| 29_H | 32_K | 1.245 | 0.96 | |
| 38_H | 73_K | 1.236 | 0.96 | |
| 5_S | 8_V | 1.227 | 0.95 | |
| 129_K | 132_R | 1.21 | 0.95 | |
| 74_A | 86_A | 1.206 | 0.95 | |
| 8_V | 52_Y | 1.204 | 0.95 | |
| 50_E | 54_E | 1.19 | 0.94 | |
| 109_R | 112_R | 1.183 | 0.94 | |
| 20_I | 36_A | 1.18 | 0.94 | |
| 57_L | 61_H | 1.173 | 0.94 | |
| 20_I | 38_H | 1.135 | 0.92 | |
| 19_A | 34_S | 1.135 | 0.92 | |
| 23_Q | 75_Q | 1.134 | 0.92 | |
| 79_S | 86_A | 1.117 | 0.92 | |
| 105_R | 108_T | 1.097 | 0.91 | |
| 17_I | 84_R | 1.095 | 0.90 | |
| 17_I | 37_I | 1.088 | 0.90 | |
| 41_F | 53_K | 1.083 | 0.90 | |
| 44_R | 57_L | 1.071 | 0.89 | |
| 72_I | 87_A | 1.066 | 0.89 | |
| 37_I | 80_Q | 1.058 | 0.88 | |
| 65_S | 71_V | 1.056 | 0.88 | |
| 43_I | 57_L | 1.042 | 0.87 | |
| 3_V | 6_R | 1.031 | 0.87 | |
| 18_T | 38_H | 1.023 | 0.86 | |
| 74_A | 77_Y | 1.007 | 0.85 | |
| 82_L | 85_E | 1.005 | 0.85 | |
| 70_I | 94_M | 1.004 | 0.84 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4dh9Y | 1 | 1 | 100 | 0.117 | Contact Map | 0.382 |
| 2jvaA | 1 | 0.7714 | 100 | 0.304 | Contact Map | 0.531 |
| 1j26A | 1 | 0.7429 | 100 | 0.336 | Contact Map | 0.377 |
| 1gqeA | 1 | 0.8143 | 99.9 | 0.516 | Contact Map | 0.374 |
| 2rsmA | 1 | 0.5857 | 99.9 | 0.536 | Contact Map | 0.551 |
| 2b3tB | 1 | 0.8214 | 99.8 | 0.565 | Contact Map | 0.467 |
| 1rq0A | 3 | 0.8214 | 99.8 | 0.57 | Contact Map | 0.524 |
| 2ihr1 | 1 | 0.8143 | 99.8 | 0.575 | Contact Map | 0.487 |
| 3d5aX | 1 | 0.8214 | 99.8 | 0.577 | Contact Map | 0.628 |
| 1zbtA | 1 | 0.8214 | 99.8 | 0.577 | Contact Map | 0.746 |
Sequence Conservation (Image Generated using WebLogo v3)