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YJJU - Uncharacterized protein YjjU
UniProt: P39407 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12597
Length: 357 (288)
Sequences: 892
Seq/Len: 3.10
YJJU
Paralog alert: 0.47 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSSA YJJU
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
38_F 293_C 3.815 1.00
48_R 291_R 2.87 1.00
140_R 179_I 2.817 1.00
48_R 75_P 2.793 1.00
54_F 204_V 2.768 1.00
140_R 147_N 2.623 1.00
284_R 288_K 2.593 1.00
297_F 300_T 2.566 1.00
263_F 301_V 2.395 1.00
268_P 293_C 2.184 1.00
146_P 187_S 2.095 1.00
42_V 206_I 2.067 1.00
253_I 264_E 2.021 1.00
255_K 259_K 2.005 1.00
45_E 294_G 2.001 1.00
33_G 166_I 1.969 1.00
42_V 265_I 1.952 1.00
138_A 149_F 1.886 0.99
45_E 295_R 1.838 0.99
176_L 181_Y 1.833 0.99
288_K 292_L 1.813 0.99
214_Y 251_Q 1.776 0.99
205_V 262_I 1.753 0.99
72_C 119_L 1.732 0.99
139_C 187_S 1.725 0.99
298_L 302_G 1.713 0.99
45_E 291_R 1.711 0.99
268_P 289_L 1.698 0.98
249_I 253_I 1.684 0.98
93_D 96_R 1.645 0.98
148_Y 188_D 1.631 0.98
29_C 39_T 1.601 0.98
195_A 200_A 1.601 0.98
193_K 197_R 1.556 0.97
149_F 159_V 1.542 0.97
196_A 203_L 1.515 0.96
138_A 159_V 1.512 0.96
26_A 203_L 1.509 0.96
289_L 293_C 1.502 0.96
122_D 129_D 1.497 0.96
135_Y 198_Q 1.494 0.96
68_S 160_I 1.483 0.96
44_D 287_Y 1.455 0.95
80_K 117_M 1.433 0.94
147_N 181_Y 1.426 0.94
26_A 56_L 1.419 0.94
263_F 304_L 1.417 0.94
194_E 198_Q 1.417 0.94
29_C 67_L 1.416 0.94
204_V 305_L 1.393 0.93
27_L 54_F 1.392 0.93
291_R 295_R 1.388 0.93
138_A 181_Y 1.374 0.93
45_E 298_L 1.349 0.92
241_H 245_S 1.322 0.91
135_Y 194_E 1.322 0.91
134_F 186_I 1.319 0.90
142_D 180_N 1.306 0.90
33_G 38_F 1.299 0.90
133_S 150_L 1.29 0.89
175_S 178_G 1.29 0.89
242_H 246_Y 1.289 0.89
175_S 180_N 1.288 0.89
56_L 135_Y 1.275 0.88
193_K 248_D 1.265 0.88
28_V 185_G 1.259 0.88
140_R 181_Y 1.253 0.87
302_G 306_T 1.246 0.87
202_T 263_F 1.242 0.87
206_I 294_G 1.228 0.86
85_Y 116_Q 1.222 0.85
55_D 200_A 1.219 0.85
147_N 179_I 1.217 0.85
42_V 294_G 1.213 0.85
138_A 147_N 1.211 0.85
195_A 203_L 1.204 0.84
194_E 197_R 1.193 0.83
234_P 237_N 1.19 0.83
39_T 43_L 1.189 0.83
292_L 296_Y 1.188 0.83
56_L 200_A 1.183 0.83
213_M 242_H 1.183 0.83
47_M 75_P 1.174 0.82
146_P 188_D 1.171 0.82
269_K 292_L 1.168 0.82
140_R 143_D 1.168 0.82
107_D 178_G 1.157 0.81
27_L 46_F 1.154 0.81
37_I 82_I 1.147 0.80
141_Q 182_L 1.147 0.80
38_F 268_P 1.147 0.80
210_P 270_P 1.146 0.80
211_S 266_Y 1.144 0.80
44_D 76_G 1.139 0.79
195_A 199_G 1.126 0.78
56_L 195_A 1.116 0.77
209_V 215_Y 1.115 0.77
67_L 134_F 1.11 0.77
120_Q 123_T 1.104 0.76
112_A 115_S 1.103 0.76
166_I 274_I 1.097 0.76
71_I 132_K 1.097 0.76
165_A 170_Y 1.097 0.76
46_F 204_V 1.09 0.75
196_A 252_F 1.083 0.74
173_G 182_L 1.081 0.74
142_D 179_I 1.079 0.74
83_M 284_R 1.079 0.74
120_Q 125_A 1.078 0.74
29_C 43_L 1.075 0.74
47_M 73_N 1.071 0.73
107_D 161_R 1.068 0.73
73_N 123_T 1.067 0.73
179_I 223_M 1.066 0.73
166_I 186_I 1.065 0.73
26_A 204_V 1.064 0.72
46_F 51_F 1.06 0.72
265_I 297_F 1.054 0.71
168_G 225_R 1.054 0.71
60_T 137_C 1.051 0.71
265_I 294_G 1.048 0.71
35_R 209_V 1.046 0.71
168_G 186_I 1.041 0.70
242_H 249_I 1.041 0.70
52_N 70_F 1.038 0.70
288_K 291_R 1.036 0.70
105_D 195_A 1.029 0.69
294_G 301_V 1.027 0.69
79_R 284_R 1.026 0.69
149_F 192_V 1.024 0.68
33_G 78_A 1.02 0.68
192_V 203_L 1.017 0.68
136_M 151_P 1.014 0.67
256_P 259_K 1.014 0.67
212_Q 254_E 1.007 0.66
84_R 103_L 1.006 0.66
164_S 195_A 1 0.66
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4akfA10.97761000.51Contact Map0.473
3tu3B10.96641000.584Contact Map0.427
1oxwA30.82631000.658Contact Map0.483
1cjyA20.910498.70.893Contact Map0.195
3i33A10.20739.80.974Contact Map0.09
2zfhA60.4098.70.975Contact Map0.007
2v8iA10.17937.40.975Contact Map0.088
3l4eA10.3957.10.976Contact Map0.104
3qfuA10.20176.10.976Contact Map0.096
2p10A60.221340.978Contact Map0.11
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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