| UniProt: | P39367 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12558 | ||
| Length: | 248 (235) | ||
| Sequences: | 2259 | ||
| Seq/Len: | 9.61 |
| YJHP
Paralog alert: 0.20 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: BIOC CMOA SMTA TAM TEHB UBIE UBIG YAFE YJHP |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 181_V | 246_I | 4.973 | 1.00 | |
| 171_V | 175_D | 3.41 | 1.00 | |
| 40_I | 54_W | 3.236 | 1.00 | |
| 120_A | 176_D | 2.971 | 1.00 | |
| 127_A | 179_Y | 2.859 | 1.00 | |
| 126_L | 136_M | 2.744 | 1.00 | |
| 172_G | 176_D | 2.539 | 1.00 | |
| 174_F | 245_L | 2.5 | 1.00 | |
| 39_R | 61_T | 2.494 | 1.00 | |
| 61_T | 89_H | 2.491 | 1.00 | |
| 125_L | 128_Q | 2.442 | 1.00 | |
| 43_L | 95_A | 2.408 | 1.00 | |
| 51_L | 62_G | 2.385 | 1.00 | |
| 109_C | 122_A | 2.261 | 1.00 | |
| 99_V | 104_C | 2.247 | 1.00 | |
| 101_N | 128_Q | 2.24 | 1.00 | |
| 183_E | 244_A | 2.124 | 1.00 | |
| 172_G | 175_D | 2.115 | 1.00 | |
| 65_I | 95_A | 2.102 | 1.00 | |
| 130_L | 136_M | 2.102 | 1.00 | |
| 180_D | 246_I | 2.023 | 1.00 | |
| 123_E | 138_I | 2.018 | 1.00 | |
| 55_A | 88_V | 2.01 | 1.00 | |
| 171_V | 184_M | 1.992 | 1.00 | |
| 116_A | 122_A | 1.937 | 1.00 | |
| 213_D | 217_A | 1.931 | 1.00 | |
| 208_E | 216_A | 1.917 | 1.00 | |
| 95_A | 116_A | 1.903 | 1.00 | |
| 105_D | 131_K | 1.876 | 1.00 | |
| 56_R | 82_L | 1.857 | 1.00 | |
| 64_G | 75_A | 1.826 | 1.00 | |
| 109_C | 112_A | 1.759 | 1.00 | |
| 65_I | 93_N | 1.759 | 1.00 | |
| 130_L | 134_G | 1.753 | 1.00 | |
| 121_G | 125_L | 1.742 | 1.00 | |
| 38_T | 59_G | 1.722 | 1.00 | |
| 120_A | 173_A | 1.707 | 1.00 | |
| 125_L | 129_S | 1.699 | 1.00 | |
| 42_D | 46_G | 1.675 | 1.00 | |
| 100_A | 103_K | 1.647 | 1.00 | |
| 135_I | 246_I | 1.642 | 1.00 | |
| 22_E | 26_A | 1.642 | 1.00 | |
| 45_S | 51_L | 1.629 | 1.00 | |
| 41_L | 104_C | 1.616 | 1.00 | |
| 117_G | 162_S | 1.604 | 1.00 | |
| 118_G | 121_G | 1.59 | 1.00 | |
| 229_R | 232_T | 1.587 | 1.00 | |
| 155_A | 222_E | 1.574 | 1.00 | |
| 138_I | 174_F | 1.55 | 1.00 | |
| 107_A | 130_L | 1.548 | 1.00 | |
| 120_A | 124_E | 1.518 | 1.00 | |
| 63_T | 91_I | 1.507 | 1.00 | |
| 107_A | 129_S | 1.501 | 1.00 | |
| 146_L | 235_R | 1.495 | 1.00 | |
| 184_M | 241_G | 1.49 | 1.00 | |
| 204_R | 217_A | 1.482 | 1.00 | |
| 64_G | 90_F | 1.458 | 1.00 | |
| 130_L | 179_Y | 1.425 | 1.00 | |
| 226_A | 229_R | 1.421 | 0.99 | |
| 140_E | 170_L | 1.367 | 0.99 | |
| 69_S | 92_H | 1.362 | 0.99 | |
| 91_I | 99_V | 1.354 | 0.99 | |
| 44_G | 109_C | 1.349 | 0.99 | |
| 120_A | 177_L | 1.344 | 0.99 | |
| 79_A | 90_F | 1.343 | 0.99 | |
| 135_I | 181_V | 1.34 | 0.99 | |
| 126_L | 130_L | 1.318 | 0.99 | |
| 39_R | 103_K | 1.314 | 0.99 | |
| 218_E | 221_A | 1.304 | 0.99 | |
| 103_K | 129_S | 1.266 | 0.99 | |
| 136_M | 174_F | 1.251 | 0.98 | |
| 48_G | 90_F | 1.21 | 0.98 | |
| 44_G | 48_G | 1.204 | 0.98 | |
| 38_T | 131_K | 1.203 | 0.98 | |
| 47_S | 70_L | 1.198 | 0.98 | |
| 103_K | 128_Q | 1.197 | 0.98 | |
| 142_Y | 241_G | 1.188 | 0.98 | |
| 20_F | 25_Y | 1.186 | 0.98 | |
| 44_G | 112_A | 1.167 | 0.97 | |
| 52_C | 79_A | 1.166 | 0.97 | |
| 212_D | 215_F | 1.156 | 0.97 | |
| 72_T | 92_H | 1.135 | 0.97 | |
| 68_S | 71_F | 1.13 | 0.96 | |
| 109_C | 138_I | 1.129 | 0.96 | |
| 65_I | 91_I | 1.122 | 0.96 | |
| 211_P | 219_V | 1.116 | 0.96 | |
| 202_T | 205_R | 1.109 | 0.96 | |
| 123_E | 170_L | 1.1 | 0.96 | |
| 207_L | 220_R | 1.084 | 0.95 | |
| 218_E | 222_E | 1.083 | 0.95 | |
| 63_T | 104_C | 1.07 | 0.95 | |
| 175_D | 182_V | 1.066 | 0.95 | |
| 245_L | 248_R | 1.061 | 0.94 | |
| 174_F | 243_F | 1.056 | 0.94 | |
| 222_E | 225_I | 1.043 | 0.94 | |
| 75_A | 90_F | 1.042 | 0.94 | |
| 69_S | 73_A | 1.035 | 0.93 | |
| 218_E | 224_N | 1.034 | 0.93 | |
| 109_C | 136_M | 1.014 | 0.93 | |
| 112_A | 116_A | 1.01 | 0.92 | |
| 55_A | 62_G | 1.006 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1nkvA | 3 | 1 | 100 | 0.323 | Contact Map | 0.561 |
| 3f4kA | 1 | 0.9879 | 100 | 0.328 | Contact Map | 0.596 |
| 3kkzA | 2 | 0.9839 | 100 | 0.36 | Contact Map | 0.64 |
| 2o57A | 4 | 0.9798 | 100 | 0.399 | Contact Map | 0.657 |
| 4kriA | 3 | 0.9758 | 100 | 0.412 | Contact Map | 0.707 |
| 3ujcA | 1 | 0.9677 | 100 | 0.413 | Contact Map | 0.679 |
| 3busA | 2 | 0.9677 | 100 | 0.428 | Contact Map | 0.665 |
| 3vc1A | 12 | 0.9194 | 100 | 0.46 | Contact Map | 0.73 |
| 2yqzA | 2 | 0.9758 | 100 | 0.464 | Contact Map | 0.613 |
| 1xxlA | 2 | 0.8952 | 100 | 0.475 | Contact Map | 0.673 |
Sequence Conservation (Image Generated using WebLogo v3)