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YHJD - Inner membrane protein YhjD
UniProt: P37642 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12248
Length: 337 (278)
Sequences: 1886
Seq/Len: 6.78

YHJD
Paralog alert: 0.42 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YHJD YIHY
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
64_R 318_A 4.579 1.00
268_L 319_W 2.818 1.00
71_A 76_F 2.661 1.00
67_N 311_R 2.35 1.00
65_L 162_A 2.31 1.00
154_G 182_Y 2.271 1.00
57_A 315_F 2.133 1.00
118_T 121_A 2.021 1.00
276_I 308_F 1.999 1.00
273_F 309_F 1.959 1.00
160_I 317_A 1.953 1.00
68_Q 72_A 1.912 1.00
61_F 311_R 1.889 1.00
249_F 269_A 1.876 1.00
64_R 169_E 1.853 1.00
265_G 320_I 1.836 1.00
110_I 114_I 1.765 1.00
161_R 254_R 1.733 1.00
70_G 314_L 1.723 1.00
168_W 320_I 1.699 1.00
274_E 277_K 1.65 1.00
246_F 259_K 1.635 1.00
65_L 158_E 1.631 1.00
168_W 277_K 1.63 1.00
284_L 301_G 1.614 1.00
107_F 120_A 1.599 1.00
121_A 124_K 1.598 1.00
273_F 295_A 1.574 1.00
268_L 272_G 1.562 1.00
161_R 253_P 1.557 0.99
57_A 319_W 1.548 0.99
167_V 314_L 1.529 0.99
75_Y 79_L 1.528 0.99
280_M 284_L 1.503 0.99
73_I 310_A 1.501 0.99
61_F 66_G 1.467 0.99
80_S 152_W 1.456 0.99
157_R 252_L 1.428 0.99
60_R 321_A 1.425 0.99
53_H 323_A 1.42 0.99
242_Y 270_A 1.403 0.99
139_L 143_A 1.388 0.99
60_R 169_E 1.381 0.98
54_L 57_A 1.379 0.98
246_F 266_T 1.376 0.98
74_T 310_A 1.361 0.98
51_I 55_I 1.357 0.98
217_L 236_I 1.352 0.98
74_T 306_F 1.345 0.98
245_F 273_F 1.33 0.98
61_F 315_F 1.318 0.98
87_V 153_M 1.317 0.98
53_H 57_A 1.313 0.98
56_R 322_T 1.307 0.98
101_M 104_Q 1.286 0.97
161_R 170_R 1.286 0.97
86_M 141_G 1.284 0.97
263_I 267_F 1.283 0.97
264_R 320_I 1.26 0.97
109_K 113_N 1.255 0.97
262_L 266_T 1.25 0.97
179_W 183_L 1.248 0.97
257_P 262_L 1.248 0.97
264_R 268_L 1.247 0.97
129_T 142_L 1.246 0.97
160_I 252_L 1.241 0.96
239_F 243_L 1.241 0.96
57_A 66_G 1.237 0.96
183_L 187_I 1.232 0.96
282_Y 286_S 1.219 0.96
58_T 62_N 1.217 0.96
205_V 208_S 1.214 0.96
82_I 130_A 1.214 0.96
242_Y 267_F 1.208 0.96
271_I 275_V 1.205 0.96
177_K 180_V 1.194 0.95
275_V 279_V 1.185 0.95
76_F 148_S 1.181 0.95
239_F 263_I 1.176 0.95
104_Q 108_D 1.17 0.95
279_V 282_Y 1.168 0.95
243_L 267_F 1.167 0.95
74_T 307_Y 1.157 0.94
273_F 277_K 1.155 0.94
238_I 270_A 1.149 0.94
148_S 155_N 1.149 0.94
182_Y 185_D 1.145 0.94
156_L 310_A 1.143 0.94
245_F 313_T 1.142 0.94
269_A 316_C 1.134 0.93
67_N 70_G 1.134 0.93
159_A 192_L 1.13 0.93
93_G 97_A 1.119 0.93
211_Q 215_S 1.111 0.92
117_P 121_A 1.108 0.92
60_R 322_T 1.108 0.92
232_I 235_A 1.104 0.92
295_A 298_S 1.102 0.92
227_P 231_L 1.093 0.92
149_G 189_L 1.091 0.92
276_I 309_F 1.088 0.91
82_I 299_V 1.082 0.91
143_A 190_I 1.074 0.91
195_A 199_T 1.073 0.91
107_F 111_L 1.071 0.91
141_G 311_R 1.067 0.90
124_K 128_N 1.065 0.90
66_G 311_R 1.065 0.90
315_F 319_W 1.053 0.90
157_R 304_A 1.052 0.89
73_I 159_A 1.051 0.89
79_L 83_P 1.048 0.89
250_W 259_K 1.047 0.89
201_S 236_I 1.042 0.89
275_V 278_I 1.039 0.89
305_F 309_F 1.037 0.89
60_R 318_A 1.028 0.88
277_K 295_A 1.02 0.87
76_F 80_S 1.019 0.87
72_A 155_N 1.019 0.87
278_I 282_Y 1.016 0.87
245_F 317_A 1.015 0.87
103_L 106_I 1.01 0.87
85_L 230_R 1.007 0.87
135_T 169_E 1.004 0.86
76_F 155_N 1.003 0.86
246_F 262_L 1.002 0.86
140_V 144_V 1.002 0.86
249_F 316_C 1.001 0.86
77_S 306_F 1.001 0.86
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4gx0A40.36221.60.965Contact Map0.262
3rlfF10.400616.60.967Contact Map0.47
3tx3A20.338315.80.967Contact Map0.484
1sb0B10.03868.60.971Contact Map
4dhxB40.28498.50.971Contact Map0.664
3oiqB10.08017.20.972Contact Map
4ainA30.24636.10.973Contact Map0.332
3tijA10.29385.60.973Contact Map0.343
3j1zP20.21074.80.974Contact Map0.275
4exuA10.18694.70.974Contact Map0.275

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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