| UniProt: | P0CG19 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10863 | ||
| Length: | 228 (228) | ||
| Sequences: | 2707 | ||
| Seq/Len: | 11.87 |
| RNPH
Paralog alert: 0.69 [within 20: 0.02] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 7_S | 10_Q | 3.873 | 1.00 | |
| 41_A | 136_A | 3.658 | 1.00 | |
| 18_R | 139_D | 3.575 | 1.00 | |
| 9_N | 223_G | 3.549 | 1.00 | |
| 22_K | 34_D | 3.211 | 1.00 | |
| 157_G | 194_D | 3.168 | 1.00 | |
| 31_E | 36_K | 2.892 | 1.00 | |
| 173_C | 224_E | 2.888 | 1.00 | |
| 15_T | 31_E | 2.82 | 1.00 | |
| 189_V | 221_A | 2.779 | 1.00 | |
| 37_V | 118_V | 2.734 | 1.00 | |
| 38_L | 119_L | 2.718 | 1.00 | |
| 157_G | 193_E | 2.63 | 1.00 | |
| 131_T | 228_L | 2.591 | 1.00 | |
| 57_G | 95_A | 2.527 | 1.00 | |
| 19_N | 139_D | 2.513 | 1.00 | |
| 134_C | 158_M | 2.456 | 1.00 | |
| 25_E | 68_R | 2.448 | 1.00 | |
| 4_A | 176_E | 2.428 | 1.00 | |
| 17_T | 31_E | 2.418 | 1.00 | |
| 39_C | 132_G | 2.328 | 1.00 | |
| 75_A | 81_G | 2.311 | 1.00 | |
| 211_H | 215_L | 2.276 | 1.00 | |
| 11_V | 173_C | 2.09 | 1.00 | |
| 69_S | 74_N | 2.088 | 1.00 | |
| 223_G | 227_P | 2.052 | 1.00 | |
| 98_L | 133_A | 1.955 | 1.00 | |
| 41_A | 114_L | 1.925 | 1.00 | |
| 97_A | 199_E | 1.92 | 1.00 | |
| 16_L | 30_V | 1.879 | 1.00 | |
| 219_A | 223_G | 1.835 | 1.00 | |
| 78_A | 83_Q | 1.797 | 1.00 | |
| 3_P | 178_V | 1.731 | 1.00 | |
| 75_A | 80_K | 1.718 | 1.00 | |
| 162_V | 173_C | 1.708 | 1.00 | |
| 141_L | 145_V | 1.691 | 1.00 | |
| 165_G | 175_L | 1.686 | 1.00 | |
| 210_T | 213_E | 1.684 | 1.00 | |
| 21_T | 40_T | 1.683 | 1.00 | |
| 166_I | 213_E | 1.651 | 1.00 | |
| 8_N | 170_E | 1.647 | 1.00 | |
| 67_P | 76_R | 1.629 | 1.00 | |
| 211_H | 222_R | 1.562 | 1.00 | |
| 106_A | 152_T | 1.547 | 1.00 | |
| 145_V | 153_N | 1.529 | 1.00 | |
| 14_V | 228_L | 1.471 | 1.00 | |
| 143_K | 147_N | 1.455 | 1.00 | |
| 84_G | 88_M | 1.451 | 1.00 | |
| 160_A | 225_S | 1.411 | 1.00 | |
| 3_P | 176_E | 1.405 | 0.99 | |
| 74_N | 81_G | 1.401 | 0.99 | |
| 16_L | 135_V | 1.356 | 0.99 | |
| 41_A | 140_A | 1.355 | 0.99 | |
| 145_V | 150_L | 1.35 | 0.99 | |
| 102_V | 137_L | 1.316 | 0.99 | |
| 46_G | 111_T | 1.308 | 0.99 | |
| 101_A | 157_G | 1.289 | 0.99 | |
| 101_A | 159_V | 1.286 | 0.99 | |
| 168_N | 206_G | 1.279 | 0.99 | |
| 134_C | 138_V | 1.247 | 0.99 | |
| 102_V | 112_I | 1.246 | 0.98 | |
| 107_L | 154_P | 1.235 | 0.98 | |
| 56_Q | 105_K | 1.232 | 0.98 | |
| 51_L | 56_Q | 1.232 | 0.98 | |
| 64_G | 83_Q | 1.224 | 0.98 | |
| 215_L | 219_A | 1.222 | 0.98 | |
| 222_R | 226_N | 1.188 | 0.98 | |
| 157_G | 192_T | 1.182 | 0.98 | |
| 212_E | 216_I | 1.175 | 0.98 | |
| 57_G | 92_R | 1.166 | 0.97 | |
| 76_R | 81_G | 1.164 | 0.97 | |
| 107_L | 141_L | 1.163 | 0.97 | |
| 171_A | 220_L | 1.158 | 0.97 | |
| 74_N | 84_G | 1.158 | 0.97 | |
| 112_I | 141_L | 1.155 | 0.97 | |
| 219_A | 222_R | 1.152 | 0.97 | |
| 189_V | 218_L | 1.148 | 0.97 | |
| 158_M | 193_E | 1.125 | 0.97 | |
| 95_A | 99_R | 1.117 | 0.96 | |
| 46_G | 49_R | 1.116 | 0.96 | |
| 138_V | 155_M | 1.114 | 0.96 | |
| 4_A | 167_V | 1.111 | 0.96 | |
| 77_E | 84_G | 1.109 | 0.96 | |
| 15_T | 29_L | 1.1 | 0.96 | |
| 141_L | 153_N | 1.099 | 0.96 | |
| 144_L | 149_K | 1.08 | 0.95 | |
| 215_L | 222_R | 1.072 | 0.95 | |
| 40_T | 117_D | 1.068 | 0.95 | |
| 43_I | 144_L | 1.066 | 0.95 | |
| 39_C | 114_L | 1.056 | 0.95 | |
| 192_T | 198_I | 1.053 | 0.95 | |
| 127_T | 130_I | 1.045 | 0.94 | |
| 192_T | 196_R | 1.043 | 0.94 | |
| 114_L | 137_L | 1.043 | 0.94 | |
| 164_V | 171_A | 1.036 | 0.94 | |
| 49_R | 110_F | 1.034 | 0.94 | |
| 21_T | 24_A | 1.033 | 0.94 | |
| 212_E | 215_L | 1.032 | 0.94 | |
| 77_E | 87_T | 1.023 | 0.93 | |
| 29_L | 36_K | 1.004 | 0.93 | |
| 211_H | 219_A | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1udnA | 1 | 1 | 100 | 0.131 | Contact Map | 0.707 |
| 3dd6A | 1 | 1 | 100 | 0.134 | Contact Map | 0.7 |
| 1oysA | 1 | 1 | 100 | 0.138 | Contact Map | 0.76 |
| 3b4tA | 6 | 1 | 100 | 0.144 | Contact Map | 0.737 |
| 1r6lA | 1 | 1 | 100 | 0.157 | Contact Map | 0.738 |
| 2po1B | 1 | 0.9693 | 100 | 0.165 | Contact Map | 0.711 |
| 3m7nD | 3 | 0.9167 | 100 | 0.165 | Contact Map | 0.736 |
| 2je6B | 1 | 0.9167 | 100 | 0.169 | Contact Map | 0.729 |
| 3m7nG | 3 | 0.9693 | 100 | 0.17 | Contact Map | 0.683 |
| 2wnrB | 3 | 0.9167 | 100 | 0.171 | Contact Map | 0.68 |
Sequence Conservation (Image Generated using WebLogo v3)