| UniProt: | P0AGG4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11887 | ||
| Length: | 139 (138) | ||
| Sequences: | 1186 | ||
| Seq/Len: | 8.59 |
| THIO2
Paralog alert: 0.62 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: THIO2 THIO |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 91_N | 94_A | 5.162 | 1.00 | |
| 40_A | 88_V | 3.002 | 1.00 | |
| 46_D | 101_R | 2.78 | 1.00 | |
| 42_G | 98_L | 2.627 | 1.00 | |
| 62_P | 91_N | 2.602 | 1.00 | |
| 76_D | 128_K | 2.469 | 1.00 | |
| 81_R | 136_N | 2.258 | 1.00 | |
| 53_L | 86_R | 2.137 | 1.00 | |
| 56_V | 112_I | 1.981 | 1.00 | |
| 118_V | 121_M | 1.946 | 1.00 | |
| 53_L | 83_G | 1.935 | 1.00 | |
| 74_F | 87_F | 1.905 | 1.00 | |
| 56_V | 87_F | 1.835 | 1.00 | |
| 42_G | 97_E | 1.8 | 1.00 | |
| 46_D | 50_K | 1.755 | 1.00 | |
| 58_D | 66_P | 1.698 | 1.00 | |
| 80_E | 132_D | 1.661 | 1.00 | |
| 127_P | 130_P | 1.644 | 1.00 | |
| 132_D | 136_N | 1.643 | 1.00 | |
| 111_M | 121_M | 1.64 | 1.00 | |
| 41_T | 44_T | 1.64 | 1.00 | |
| 92_T | 107_I | 1.591 | 1.00 | |
| 111_M | 118_V | 1.566 | 1.00 | |
| 58_D | 89_K | 1.532 | 1.00 | |
| 48_L | 55_V | 1.528 | 1.00 | |
| 112_I | 138_S | 1.507 | 1.00 | |
| 130_P | 133_S | 1.499 | 1.00 | |
| 120_D | 134_W | 1.445 | 0.99 | |
| 57_I | 113_F | 1.414 | 0.99 | |
| 59_F | 102_F | 1.407 | 0.99 | |
| 42_G | 95_E | 1.39 | 0.99 | |
| 110_I | 122_L | 1.323 | 0.99 | |
| 126_V | 130_P | 1.315 | 0.99 | |
| 64_C | 67_C | 1.27 | 0.98 | |
| 60_W | 107_I | 1.25 | 0.98 | |
| 105_R | 121_M | 1.22 | 0.98 | |
| 77_V | 87_F | 1.211 | 0.97 | |
| 24_K | 29_G | 1.203 | 0.97 | |
| 80_E | 128_K | 1.2 | 0.97 | |
| 36_E | 79_Q | 1.198 | 0.97 | |
| 90_V | 98_L | 1.187 | 0.97 | |
| 75_E | 89_K | 1.161 | 0.96 | |
| 4_V | 11_I | 1.159 | 0.96 | |
| 39_N | 75_E | 1.152 | 0.96 | |
| 18_R | 21_D | 1.15 | 0.96 | |
| 2_N | 11_I | 1.127 | 0.96 | |
| 112_I | 135_L | 1.122 | 0.95 | |
| 58_D | 64_C | 1.095 | 0.95 | |
| 81_R | 134_W | 1.094 | 0.94 | |
| 102_F | 113_F | 1.093 | 0.94 | |
| 81_R | 132_D | 1.085 | 0.94 | |
| 56_V | 135_L | 1.076 | 0.94 | |
| 92_T | 104_I | 1.075 | 0.94 | |
| 56_V | 85_V | 1.074 | 0.94 | |
| 58_D | 63_W | 1.067 | 0.93 | |
| 59_F | 92_T | 1.066 | 0.93 | |
| 47_K | 50_K | 1.063 | 0.93 | |
| 52_D | 115_N | 1.06 | 0.93 | |
| 41_T | 95_E | 1.048 | 0.93 | |
| 98_L | 102_F | 1.04 | 0.92 | |
| 63_W | 66_P | 1.039 | 0.92 | |
| 77_V | 123_N | 1.037 | 0.92 | |
| 63_W | 93_E | 1.032 | 0.92 | |
| 62_P | 107_I | 1.027 | 0.92 | |
| 70_F | 110_I | 1.022 | 0.91 | |
| 126_V | 134_W | 1.022 | 0.91 | |
| 7_H | 30_H | 1.02 | 0.91 | |
| 38_I | 86_R | 1.02 | 0.91 | |
| 59_F | 111_M | 1.013 | 0.91 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2pptA | 2 | 0.9928 | 100 | 0.367 | Contact Map | 0.751 |
| 3p2aA | 4 | 0.9928 | 100 | 0.444 | Contact Map | 0.824 |
| 1v98A | 2 | 0.9856 | 100 | 0.463 | Contact Map | 0.723 |
| 3f8uA | 2 | 0.7554 | 100 | 0.474 | Contact Map | 0.756 |
| 3bj5A | 1 | 0.8201 | 100 | 0.482 | Contact Map | 0.546 |
| 2r2jA | 1 | 0.7842 | 100 | 0.483 | Contact Map | 0.741 |
| 4ekzA | 1 | 0.9424 | 100 | 0.485 | Contact Map | 0.675 |
| 2b5eA | 1 | 0.8273 | 99.9 | 0.494 | Contact Map | 0.74 |
| 2qgvA | 10 | 0.8633 | 99.9 | 0.495 | Contact Map | 0.654 |
| 2qsiA | 2 | 0.8129 | 99.9 | 0.495 | Contact Map | 0.636 |
Sequence Conservation (Image Generated using WebLogo v3)