| UniProt: | P0AG11 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11057 | ||
| Length: | 139 (128) | ||
| Sequences: | 2553 | ||
| Seq/Len: | 19.95 |
| UMUD
Paralog alert: 0.49 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: COHE LEXA UMUD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 98_K | 110_M | 4.586 | 1.00 | |
| 72_L | 96_V | 2.842 | 1.00 | |
| 59_D | 114_Y | 2.817 | 1.00 | |
| 104_T | 118_T | 2.756 | 1.00 | |
| 63_D | 112_S | 2.722 | 1.00 | |
| 22_V | 87_I | 2.616 | 1.00 | |
| 24_C | 56_A | 2.581 | 1.00 | |
| 100_Q | 108_I | 2.522 | 1.00 | |
| 95_T | 109_P | 2.355 | 1.00 | |
| 70_D | 136_K | 2.264 | 1.00 | |
| 15_F | 53_F | 2.127 | 1.00 | |
| 100_Q | 106_Q | 2.121 | 1.00 | |
| 64_G | 110_M | 2.088 | 1.00 | |
| 80_A | 86_V | 1.969 | 1.00 | |
| 67_S | 70_D | 1.95 | 1.00 | |
| 53_F | 71_L | 1.949 | 1.00 | |
| 50_A | 76_S | 1.815 | 1.00 | |
| 56_A | 72_L | 1.778 | 1.00 | |
| 84_D | 130_V | 1.746 | 1.00 | |
| 59_D | 113_A | 1.738 | 1.00 | |
| 66_I | 85_I | 1.733 | 1.00 | |
| 55_K | 71_L | 1.73 | 1.00 | |
| 60_S | 97_K | 1.695 | 1.00 | |
| 21_L | 57_S | 1.687 | 1.00 | |
| 74_V | 131_V | 1.665 | 1.00 | |
| 96_V | 131_V | 1.665 | 1.00 | |
| 134_V | 138_M | 1.66 | 1.00 | |
| 108_I | 116_P | 1.591 | 1.00 | |
| 67_S | 136_K | 1.575 | 1.00 | |
| 64_G | 98_K | 1.549 | 1.00 | |
| 63_D | 110_M | 1.529 | 1.00 | |
| 53_F | 73_I | 1.494 | 1.00 | |
| 89_A | 126_D | 1.492 | 1.00 | |
| 91_D | 124_T | 1.484 | 1.00 | |
| 38_I | 53_F | 1.461 | 1.00 | |
| 85_I | 98_K | 1.4 | 0.99 | |
| 14_T | 39_D | 1.4 | 0.99 | |
| 74_V | 87_I | 1.384 | 0.99 | |
| 56_A | 96_V | 1.362 | 0.99 | |
| 86_V | 99_L | 1.357 | 0.99 | |
| 91_D | 123_D | 1.292 | 0.99 | |
| 109_P | 116_P | 1.243 | 0.98 | |
| 17_L | 36_Q | 1.216 | 0.98 | |
| 15_F | 51_T | 1.204 | 0.98 | |
| 54_V | 87_I | 1.198 | 0.98 | |
| 119_I | 125_L | 1.18 | 0.98 | |
| 89_A | 128_F | 1.171 | 0.98 | |
| 57_S | 68_D | 1.165 | 0.97 | |
| 22_V | 54_V | 1.164 | 0.97 | |
| 52_Y | 76_S | 1.161 | 0.97 | |
| 82_H | 100_Q | 1.157 | 0.97 | |
| 88_A | 99_L | 1.147 | 0.97 | |
| 17_L | 38_I | 1.135 | 0.97 | |
| 58_G | 68_D | 1.134 | 0.97 | |
| 106_Q | 118_T | 1.129 | 0.97 | |
| 64_G | 85_I | 1.128 | 0.97 | |
| 74_V | 96_V | 1.124 | 0.97 | |
| 14_T | 37_R | 1.099 | 0.96 | |
| 25_G | 58_G | 1.08 | 0.95 | |
| 65_G | 110_M | 1.067 | 0.95 | |
| 104_T | 120_S | 1.059 | 0.95 | |
| 106_Q | 116_P | 1.05 | 0.94 | |
| 58_G | 97_K | 1.044 | 0.94 | |
| 56_A | 66_I | 1.037 | 0.94 | |
| 101_L | 105_V | 1.032 | 0.94 | |
| 72_L | 131_V | 1.031 | 0.94 | |
| 23_Q | 27_P | 1.012 | 0.93 | |
| 81_S | 84_D | 1.006 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1jhfA | 2 | 0.9784 | 99.9 | 0.237 | Contact Map | 0.739 |
| 1umuA | 2 | 0.8201 | 99.9 | 0.248 | Contact Map | 0.786 |
| 3k2zA | 2 | 0.9712 | 99.9 | 0.253 | Contact Map | 0.769 |
| 2hnfA | 1 | 0.8633 | 99.9 | 0.268 | Contact Map | 0.727 |
| 3bdnA | 2 | 0.9424 | 99.9 | 0.287 | Contact Map | 0.732 |
| 1kcaA | 8 | 0.705 | 99.8 | 0.38 | Contact Map | 0.843 |
| 2fjrA | 2 | 0.8417 | 99.7 | 0.445 | Contact Map | 0.386 |
| 4me8A | 1 | 0.6115 | 98.8 | 0.649 | Contact Map | 0.712 |
| 4k8wA | 1 | 0.5899 | 98.7 | 0.661 | Contact Map | 0.356 |
| 1b12A | 4 | 0.6691 | 97.8 | 0.733 | Contact Map | 0.591 |
Sequence Conservation (Image Generated using WebLogo v3)