OPENSEQ.org - YGAM - ECOLI GREMLIN

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YGAM - Uncharacterized protein YgaM

UniProt:	P0ADQ7	Sequence MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG13285
Length:	109 (100)
Sequences:	315
Seq/Len:	3.15

YGAM
Paralog alert: 0.88 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ELAB YGAM YQJD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
81_F	87_W	2.388	1.00
99_F	104_L	1.891	0.99
93_A	97_G	1.711	0.99
79_D	83_R	1.679	0.98
59_A	96_V	1.629	0.98
89_S	98_I	1.491	0.96
59_A	80_S	1.48	0.96
21_V	25_A	1.468	0.95
89_S	93_A	1.45	0.95
30_S	82_V	1.39	0.93
27_S	91_G	1.369	0.93
49_K	96_V	1.356	0.92
42_E	45_A	1.354	0.92
27_S	30_S	1.341	0.92
24_L	58_R	1.329	0.91
43_A	71_A	1.324	0.91
31_V	78_A	1.304	0.90
17_I	61_M	1.292	0.89
98_I	104_L	1.287	0.89
9_D	12_D	1.279	0.89
101_G	106_M	1.278	0.89
103_L	107_R	1.253	0.87
16_D	48_S	1.226	0.86
22_N	75_V	1.217	0.85
82_V	85_R	1.215	0.85
52_A	55_K	1.2	0.84
96_V	104_L	1.169	0.82
32_L	87_W	1.165	0.82
87_W	90_V	1.161	0.81
82_V	90_V	1.16	0.81
9_D	100_I	1.155	0.81
90_V	94_A	1.153	0.81
68_Q	72_R	1.151	0.81
44_E	47_R	1.136	0.79
47_R	67_V	1.133	0.79
29_E	58_R	1.126	0.79
50_A	53_L	1.125	0.79
13_G	58_R	1.103	0.77
79_D	98_I	1.087	0.75
41_G	44_E	1.078	0.74
28_L	40_K	1.078	0.74
70_A	75_V	1.074	0.74
10_V	13_G	1.072	0.74
43_A	47_R	1.056	0.72
37_S	69_Q	1.055	0.72
78_A	81_F	1.025	0.69
82_V	100_I	1.02	0.68
27_S	89_S	1.008	0.67
31_V	35_W	1.005	0.67
39_A	43_A	1.004	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
3obvE	4	0.9541	28	0.9	Contact Map	0.181
2lomA	1	0.4587	23	0.904	Contact Map	0.12
1v9dA	4	0.9541	21.6	0.905	Contact Map	0.258
2lonA	1	0.4771	15.4	0.911	Contact Map	0.105
4dndA	1	0.789	13.2	0.914	Contact Map	0.424
2j1dG	1	0.9541	11.3	0.916	Contact Map	0.189
1ux5A	1	0.9633	10.6	0.918	Contact Map	0.179
2wvqA	2	0.6881	10.3	0.918	Contact Map	0.54
3ph0A	2	0.5413	9.8	0.919	Contact Map	0.422
4eahA	4	0.8899	9.2	0.92	Contact Map	0.179

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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