| UniProt: | P0AB55 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11607 | ||
| Length: | 98 (98) | ||
| Sequences: | 863 | ||
| Seq/Len: | 8.81 |
| YCII
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 4_V | 60_T | 3.317 | 1.00 | |
| 72_Q | 76_D | 3.076 | 1.00 | |
| 68_L | 72_Q | 2.825 | 1.00 | |
| 66_E | 70_A | 2.34 | 1.00 | |
| 15_E | 19_S | 2.165 | 1.00 | |
| 67_S | 70_A | 2.058 | 1.00 | |
| 23_A | 26_A | 1.75 | 1.00 | |
| 69_E | 73_A | 1.743 | 1.00 | |
| 42_P | 97_V | 1.717 | 1.00 | |
| 30_L | 34_E | 1.7 | 1.00 | |
| 2_L | 38_L | 1.661 | 1.00 | |
| 73_A | 77_A | 1.606 | 1.00 | |
| 71_A | 75_A | 1.597 | 1.00 | |
| 39_T | 62_I | 1.565 | 1.00 | |
| 8_Q | 88_H | 1.55 | 1.00 | |
| 26_A | 29_Q | 1.549 | 1.00 | |
| 20_V | 83_A | 1.517 | 1.00 | |
| 39_T | 98_F | 1.498 | 1.00 | |
| 21_R | 80_Y | 1.475 | 1.00 | |
| 22_P | 26_A | 1.473 | 1.00 | |
| 6_Y | 43_M | 1.462 | 1.00 | |
| 43_M | 60_T | 1.444 | 0.99 | |
| 15_E | 18_L | 1.405 | 0.99 | |
| 40_A | 80_Y | 1.386 | 0.99 | |
| 4_V | 43_M | 1.356 | 0.99 | |
| 8_Q | 90_S | 1.341 | 0.99 | |
| 21_R | 25_L | 1.267 | 0.98 | |
| 5_I | 71_A | 1.244 | 0.98 | |
| 16_K | 20_V | 1.241 | 0.98 | |
| 32_H | 98_F | 1.241 | 0.98 | |
| 65_F | 74_W | 1.217 | 0.98 | |
| 23_A | 82_A | 1.214 | 0.98 | |
| 23_A | 83_A | 1.175 | 0.97 | |
| 20_V | 23_A | 1.157 | 0.96 | |
| 78_D | 81_V | 1.148 | 0.96 | |
| 29_Q | 33_D | 1.135 | 0.96 | |
| 65_F | 78_D | 1.118 | 0.95 | |
| 9_D | 59_S | 1.117 | 0.95 | |
| 39_T | 94_F | 1.115 | 0.95 | |
| 31_L | 74_W | 1.097 | 0.95 | |
| 28_L | 37_L | 1.095 | 0.95 | |
| 16_K | 19_S | 1.084 | 0.94 | |
| 61_V | 80_Y | 1.054 | 0.93 | |
| 25_L | 28_L | 1.039 | 0.93 | |
| 10_K | 13_S | 1.035 | 0.92 | |
| 3_Y | 91_V | 1.034 | 0.92 | |
| 30_L | 33_D | 1.017 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1mwqA | 2 | 1 | 99.9 | 0.264 | Contact Map | 0.757 |
| 4lbhA | 1 | 0.9286 | 99.8 | 0.299 | Contact Map | 0.633 |
| 1s7iA | 1 | 0.9694 | 99.5 | 0.484 | Contact Map | 0.52 |
| 1mliA | 10 | 0.8673 | 99.1 | 0.573 | Contact Map | 0.023 |
| 3znuA | 10 | 0.8673 | 99 | 0.582 | Contact Map | 0.722 |
| 3lo3A | 28 | 0.8673 | 10.8 | 0.909 | Contact Map | 0.647 |
| 3hhlA | 1 | 0.949 | 8.3 | 0.914 | Contact Map | 0.622 |
| 2hiyA | 4 | 0.9898 | 6.4 | 0.918 | Contact Map | 0.381 |
| 4jo0A | 1 | 0.8878 | 5.8 | 0.92 | Contact Map | 0.382 |
| 4f9iA | 2 | 1 | 5.2 | 0.921 | Contact Map | 0.454 |
Sequence Conservation (Image Generated using WebLogo v3)