| UniProt: | P0A729 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11438 | ||
| Length: | 194 (189) | ||
| Sequences: | 2594 | ||
| Seq/Len: | 13.72 |
| YCEF
Paralog alert: 0.45 [within 20: 0.00] - ratio of genomes with paralogs Cluster includes: YCEF YHDE |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 93_R | 132_E | 3.64 | 1.00 | |
| 85_E | 140_R | 3.284 | 1.00 | |
| 75_D | 98_N | 3.272 | 1.00 | |
| 77_E | 94_K | 3.215 | 1.00 | |
| 99_I | 126_H | 3.166 | 1.00 | |
| 14_R | 18_E | 2.947 | 1.00 | |
| 89_R | 136_D | 2.721 | 1.00 | |
| 87_N | 90_L | 2.55 | 1.00 | |
| 49_A | 107_A | 2.506 | 1.00 | |
| 124_D | 165_E | 2.317 | 1.00 | |
| 31_V | 51_E | 2.258 | 1.00 | |
| 123_F | 172_L | 2.258 | 1.00 | |
| 101_T | 124_D | 2.079 | 1.00 | |
| 101_T | 122_P | 2.07 | 1.00 | |
| 126_H | 162_E | 2.052 | 1.00 | |
| 139_V | 145_L | 1.994 | 1.00 | |
| 123_F | 171_T | 1.976 | 1.00 | |
| 46_L | 120_V | 1.946 | 1.00 | |
| 50_Q | 54_Q | 1.937 | 1.00 | |
| 89_R | 139_V | 1.924 | 1.00 | |
| 96_S | 130_L | 1.907 | 1.00 | |
| 131_S | 134_E | 1.875 | 1.00 | |
| 85_E | 139_V | 1.83 | 1.00 | |
| 39_E | 47_R | 1.829 | 1.00 | |
| 157_G | 160_L | 1.794 | 1.00 | |
| 126_H | 163_R | 1.764 | 1.00 | |
| 175_L | 180_L | 1.75 | 1.00 | |
| 121_E | 171_T | 1.728 | 1.00 | |
| 14_R | 24_F | 1.723 | 1.00 | |
| 83_L | 87_N | 1.702 | 1.00 | |
| 99_I | 124_D | 1.696 | 1.00 | |
| 3_K | 25_E | 1.674 | 1.00 | |
| 89_R | 135_I | 1.635 | 1.00 | |
| 130_L | 135_I | 1.598 | 1.00 | |
| 96_S | 132_E | 1.562 | 1.00 | |
| 4_L | 66_I | 1.555 | 1.00 | |
| 143_H | 155_G | 1.502 | 1.00 | |
| 85_E | 89_R | 1.501 | 1.00 | |
| 100_V | 151_F | 1.483 | 1.00 | |
| 9_T | 28_A | 1.473 | 1.00 | |
| 96_S | 129_H | 1.469 | 1.00 | |
| 121_E | 179_A | 1.465 | 1.00 | |
| 88_A | 144_P | 1.463 | 1.00 | |
| 44_L | 71_V | 1.454 | 1.00 | |
| 85_E | 145_L | 1.444 | 1.00 | |
| 54_Q | 116_L | 1.437 | 1.00 | |
| 91_Q | 150_S | 1.423 | 1.00 | |
| 15_A | 19_K | 1.418 | 1.00 | |
| 66_I | 108_L | 1.415 | 1.00 | |
| 89_R | 93_R | 1.409 | 1.00 | |
| 74_L | 98_N | 1.405 | 0.99 | |
| 50_Q | 118_T | 1.4 | 0.99 | |
| 7_A | 67_G | 1.378 | 0.99 | |
| 107_A | 118_T | 1.373 | 0.99 | |
| 103_Y | 122_P | 1.362 | 0.99 | |
| 53_A | 67_G | 1.352 | 0.99 | |
| 153_S | 173_V | 1.344 | 0.99 | |
| 117_Q | 186_R | 1.294 | 0.99 | |
| 108_L | 183_M | 1.279 | 0.99 | |
| 169_P | 173_V | 1.275 | 0.99 | |
| 103_Y | 120_V | 1.27 | 0.99 | |
| 73_V | 103_Y | 1.263 | 0.99 | |
| 27_A | 59_R | 1.255 | 0.99 | |
| 44_L | 48_L | 1.246 | 0.98 | |
| 84_T | 87_N | 1.245 | 0.98 | |
| 119_E | 183_M | 1.241 | 0.98 | |
| 18_E | 24_F | 1.231 | 0.98 | |
| 29_P | 56_L | 1.216 | 0.98 | |
| 132_E | 136_D | 1.21 | 0.98 | |
| 79_T | 91_Q | 1.21 | 0.98 | |
| 128_R | 134_E | 1.186 | 0.98 | |
| 119_E | 179_A | 1.178 | 0.98 | |
| 106_L | 119_E | 1.176 | 0.98 | |
| 147_C | 152_K | 1.172 | 0.98 | |
| 5_I | 56_L | 1.167 | 0.97 | |
| 50_Q | 107_A | 1.148 | 0.97 | |
| 88_A | 150_S | 1.142 | 0.97 | |
| 117_Q | 183_M | 1.141 | 0.97 | |
| 64_L | 108_L | 1.125 | 0.97 | |
| 12_W | 146_H | 1.119 | 0.96 | |
| 14_R | 26_C | 1.105 | 0.96 | |
| 139_V | 144_P | 1.103 | 0.96 | |
| 133_A | 137_N | 1.097 | 0.96 | |
| 106_L | 180_L | 1.089 | 0.96 | |
| 74_L | 94_K | 1.061 | 0.95 | |
| 90_L | 94_K | 1.059 | 0.95 | |
| 16_L | 175_L | 1.055 | 0.95 | |
| 123_F | 164_L | 1.055 | 0.95 | |
| 66_I | 180_L | 1.055 | 0.95 | |
| 31_V | 48_L | 1.05 | 0.94 | |
| 128_R | 178_I | 1.044 | 0.94 | |
| 95_A | 151_F | 1.044 | 0.94 | |
| 45_V | 105_G | 1.032 | 0.94 | |
| 40_S | 43_Q | 1.03 | 0.94 | |
| 47_R | 51_E | 1.017 | 0.93 | |
| 93_R | 135_I | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4jhcA | 2 | 0.9948 | 100 | 0.008 | Contact Map | 0.897 |
| 1ex2A | 2 | 0.9691 | 100 | 0.023 | Contact Map | 0.902 |
| 2p5xA | 2 | 0.9948 | 100 | 0.038 | Contact Map | 0.894 |
| 2amhA | 1 | 0.9588 | 100 | 0.039 | Contact Map | 0.682 |
| 4bnqA | 2 | 0.8866 | 99.7 | 0.709 | Contact Map | 0.396 |
| 3tquA | 4 | 0.8814 | 99.5 | 0.753 | Contact Map | 0.397 |
| 1k7kA | 1 | 0.8763 | 96.8 | 0.886 | Contact Map | 0.538 |
| 1v7rA | 1 | 0.768 | 96.6 | 0.888 | Contact Map | 0.287 |
| 1b78A | 2 | 0.8402 | 96.4 | 0.891 | Contact Map | 0.465 |
| 1vp2A | 2 | 0.8402 | 88.7 | 0.919 | Contact Map | 0.548 |
Sequence Conservation (Image Generated using WebLogo v3)