May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
lsh and wdr
Genes: A B A+B
Length: 750 900 1650
Sequences: 1 1 1
Seq/Len: 0 0 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
7977 0 lsh and wdr Δgene:(0, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7976 0 lsh and wdr Δgene:(0, 20) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7975 0 lsh and wdr Δgene:(0, 0) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7974 0 lsh and wdr Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7973 0 lsh and wdr Δgene:(1, 100) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7972 0 lsh and wdr Δgene:(1, 20) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7971 0 lsh and wdr Δgene:(1, 100) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
7970 0 lsh and wdr Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
Page generated in 0.0265 seconds.