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S2SLF1_S3RNase_4
Genes: A B A+B
Length: 389 222 563
Sequences: 2793 784 38
Seq/Len: 7.18 3.53 0.07
MirrorTree (Pazo et al. 2001) 0.22
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.19 0.03 0.02
2 0.22 0.03 0.03
5 0.25 0.04 0.03
10 0.26 0.04 0.03
20 0.27 0.04 0.04
100 0.30 0.04 0.06
∞ 0.36 0.05 0.14
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.07 < 0.6).
ID Seq/Len Name Options I_Prob Status
7848 0.26 S2SLF1_S3RNase Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) 0.00 Done - Shared
7847 0.09 S2SLF1_S3RNase_10JHfull Δgene:(1, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (r132) 0.00 Done - Shared
7841 0.07 S2SLF1_S3RNase_4 Δgene:(1, 100) A:(1E-04, 8) B:(1E-10, 8) msa: HHblits (2015_06) Killed - Shared
7838 0.07 S2SLF1_S3RNase_10 Δgene:(1, 100) A:(1E-10, 8) B:(1E-10, 8) msa: HHblits (2015_06) Killed - Shared
7837 0.09 S2SLF1_S3RNase Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) 0.00 Done - Shared
7833 0.05 S2SLF1_S3RNase Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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