|
| Genes: |
A |
B |
A+B |
| Length: |
130 |
130 |
260 |
| Sequences: |
425 |
195 |
1 |
| Seq/Len: |
3.27 |
1.5 |
0 |
|
|
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
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Jackhmmer results
Sequence A: (Date: 2015_03) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
Sequence B: (Date: 2015_03) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
[Show Jackhmmer results] - Maybe useful in deciding what regions to trim. |
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| Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment.
| Figure 2: Distribution of Δgene across all genomes. |
Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
| ID |
Seq/Len |
Name |
Options |
I_Prob |
Status |
| 2247 |
0.86 |
ntd p52_1_130 |
Δgene:(0, 0) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_03)
|
0.81 |
Done |
| 2241 |
0.64 |
ntd p52_1_130 |
Δgene:(0, 0) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_03)
|
0.03 |
Done |
| 2239 |
0.02 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2238 |
0.02 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-02, 8) B:(1E-04, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2237 |
0.06 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2236 |
0.06 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-04, 8) B:(1E-06, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2235 |
0.09 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2234 |
0.09 |
ntd p52_1_130 |
Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_03)
|
|
Killed |
| 2233 |
0 |
ntd p52_1_130 |
Δgene:(0, 0) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03)
|
|
Killed - Shared |
| 2232 |
0 |
ntd p52_1_130 |
Δgene:(1, 1) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03)
|
|
Killed - Shared |
| 2227 |
0 |
ntd p52_1_130 |
Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03)
|
|
Killed - Shared |