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OPENSEQ.org
bub3_bubr
Genes: A B A+B
Length: 341 515 856
Sequences: 1305 141 4
Seq/Len: 3.83 0.27 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.02 0.00 0.00
2 0.02 0.00 0.00
5 0.02 0.00 0.00
10 0.02 0.00 0.00
20 0.03 0.00 0.00
100 0.04 0.00 0.01
∞ 0.11 0.00 0.06
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
0201 0 bub3_bubr1 Δgene:(1, 2) A:(1E-40, 8) B:(1E-04, 8) msa: Jackhmmer (2014_03) Killed - Shared
0200 0 bub3_bubr1 Δgene:(1, 10) A:(1E-40, 8) B:(1E-04, 8) msa: Jackhmmer (2014_03) Killed - Shared
0199 0.01 bub3_bubr1 Δgene:(1, ∞) A:(1E-40, 8) B:(1E-04, 8) msa: Jackhmmer (2014_03) Killed - Shared
0198 0 bub3_bubr Δgene:(1, 20) A:(1E-40, 8) B:(1E-06, 8) msa: Jackhmmer (2014_03) Killed - Shared
0197 0 bub3_bubr1 Δgene:(1, 20) A:(1E-60, 8) B:(1E-10, 8) msa: Jackhmmer (2014_03) Killed - Shared
0196 0 bub3_bubr Δgene:(1, 20) A:(1E-40, 8) B:(1E-20, 8) msa: Jackhmmer (2014_03) Killed - Shared
0195 0 bub3_bubr1 Δgene:(1, 20) A:(1E-80, 8) B:(1E-20, 8) msa: Jackhmmer (2014_03) Killed - Shared
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