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OPENSEQ.org
Mce4A-Mce4B
Genes: A B A+B
Length: 400 350 750
Sequences: 1 1 1
Seq/Len: 0 0 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
11266 0.7 Mce4A-Mce4B Δgene:(1, 1) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11265 0.7 Mce4A-Mce4B Δgene:(1, 2) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11264 0.7 Mce4A-Mce4B Δgene:(1, 5) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11263 0.01 Mce4A-Mce4B Δgene:(1, 20) A:(1E-40, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
11262 0 Mce4A-Mce4B Δgene:(1, 20) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
11253 0.71 Mce4A-Mce4B Δgene:(1, 20) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11244 1.08 Mce4A-Mce4B-2 Δgene:(0, 2) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) 1.00 Done - Shared
11243 1.08 Mce4A-Mce4B-2 Δgene:(0, 1) A:(1E-02, 8) B:(1E-04, 8) msa: HHblits (2015_06) 1.00 Done - Shared
11242 1.08 Mce4A-Mce4B-2 Δgene:(0, 1) A:(1E-02, 2) B:(1E-04, 2) msa: HHblits (2015_06) 1.00 Done - Shared
11241 0.7 Mce4A-Mce4B Δgene:(1, 10) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11233 0.7 Katherine Δgene:(0, 1) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) 0.00 Done - Shared
11232 0 Mce4A-Mce4B Δgene:(1, 1) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
11231 1.08 Mce4A-Mce4B-2 Δgene:(0, 1) A:(1E-02, 2) B:(1E-02, 2) msa: HHblits (2015_06) 1.00 Done - Shared
11230 0.01 Mce4A-Mce4Bx3 Δgene:(1, 1) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
11229 0.01 Mce4A-Mce4B-2 Δgene:(1, 100) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
11223 0.02 Katherine Δgene:(1, 20) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2015_06) Killed - Shared
11214 0.03 Mce4A-Mce4B Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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