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OPENSEQ.org
G12
Genes: A B A+B
Length: 236 286 522
Sequences: 13 17 1
Seq/Len: 0.06 0.06 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 1.00 1.00 0.00
2 1.00 1.00 0.00
5 1.00 1.00 0.00
10 1.00 1.00 0.00
20 1.00 1.00 0.00
100 1.00 1.00 0.00
∞ 1.00 1.00 0.00
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
 WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (1.00 > 0.4) of paralogs.
  • For sequence B, there is a high ratio (1.00 > 0.4) of paralogs.
ID Seq/Len Name Options I_Prob Status
1127 0 G12 Δgene:(1, ∞) A:(1E-02, 4) B:(1E-04, 4) msa: Jackhmmer (2014_03) Killed - Shared
1126 0 G12 Δgene:(1, 1) A:(1E-02, 4) B:(1E-04, 4) msa: HHblits (2013_03) Killed - Shared
1125 0 G12 Δgene:(0, 1) A:(1E-02, 4) B:(1E-02, 4) msa: HHblits (2013_03) Killed - Shared
1124 0 G12 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2013_03) Killed - Shared
1123 0 G12 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2013_03) Killed - Shared
1122 0 G12 Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: HHblits (2013_03) Killed - Shared
1121 0 G12 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2013_03) Killed - Shared
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