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OPENSEQ.org
wnt2sfrp1
Genes: A B A+B
Length: 360 314 594
Sequences: 391 92 22
Seq/Len: 1.09 0.29 0.04
MirrorTree (Pazo et al. 2001) 0.42
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.12 0.02 0.00
2 0.13 0.02 0.00
5 0.15 0.02 0.00
10 0.15 0.02 0.00
20 0.16 0.02 0.00
100 0.19 0.02 0.01
∞ 0.20 0.02 0.03
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.04 < 0.6).
ID Seq/Len Name Options I_Prob Status
10075 0 wnt2sfrp1 Δgene:(0, 0) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
10072 0 wnt2sfrp1 Δgene:(0, 0) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (r132) Killed - Shared
10071 0.02 wnt2sfrp1 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (r132) Killed - Shared
10070 0.03 wnt2sfrp1 Δgene:(1, ∞) A:(1E-02, 1) B:(1E-02, 1) msa: Jackhmmer (r132) Killed - Shared
10069 0.04 wnt2sfrp1 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (r132) Killed - Shared
10048 0 wnt2sfrp1 Δgene:(1, 20) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
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