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OPENSEQ.org
YDJF - YDJI
UniProt: P77721 - P77704
Length: 530
Sequences: 375
Seq/Len: 0.71
I_Prob: 0.00
YDJF - Uncharacterized HTH-type transcriptional regulator YdjF
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW 		YDJI - Uncharacterized protein YdjI
Paralog alert: 0.36 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: ALF GATY KBAY YDJI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
91_I 14_N 1.21 0.00
87_A 85_S 1.05 0.00
91_I 200_S 0.98 0.00
175_G 89_I 0.98 0.00
118_L 187_L 0.96 0.00
145_L 104_A 0.94 0.00
250_L 1_M 0.93 0.00
181_G 132_A 0.91 0.00
36_I 268_I 0.89 0.00
206_L 193_K 0.88 0.00
91_I 53_V 0.87 0.00
44_E 120_V 0.86 0.00
88_L 192_V 0.85 0.00
226_I 110_E 0.85 0.00
166_V 98_N 0.83 0.00
208_D 205_L 0.82 0.00
105_V 30_L 0.82 0.00
250_L 155_P 0.81 0.00
177_D 229_I 0.80 0.00
250_L 240_A 0.79 0.00
20_V 141_T 0.79 0.00
186_N 68_M 0.79 0.00
81_Q 104_A 0.79 0.00
227_N 193_K 0.79 0.00
18_K 172_V 0.79 0.00
250_L 268_I 0.78 0.00
228_Y 190_E 0.78 0.00
209_H 221_S 0.77 0.00
175_G 4_D 0.77 0.00
103_S 77_I 0.77 0.00
85_R 258_K 0.77 0.00
103_S 252_L 0.77 0.00
209_H 189_F 0.76 0.00
84_A 53_V 0.76 0.00
146_N 32_G 0.76 0.00
76_F 46_I 0.76 0.00
176_L 255_E 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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