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OPENSEQ.org

HYFF - NUOI
UniProt: P77437 - P0AFD6
Length: 706
Sequences: 405
Seq/Len: 0.61
I_Prob: 0.00

HYFF - Hydrogenase-4 component F
Paralog alert: 0.86 [within 20: 0.60] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
NUOI - NADH-quinone oxidoreductase subunit I
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
339_A 17_I 1.35 0.00
410_I 17_I 1.28 0.00
385_V 104_L 1.10 0.00
74_G 78_Q 1.06 0.00
99_R 86_R 1.05 0.00
185_L 22_L 1.03 0.00
136_I 14_V 1.01 0.00
463_S 31_R 1.00 0.00
397_M 31_R 0.99 0.00
486_I 14_V 0.98 0.00
404_L 40_L 0.98 0.00
340_A 80_A 0.96 0.00
237_P 86_R 0.96 0.00
112_L 106_E 0.96 0.00
132_S 79_K 0.96 0.00
237_P 35_E 0.96 0.00
196_Q 104_L 0.96 0.00
404_L 35_E 0.96 0.00
459_W 135_E 0.94 0.00
9_L 15_R 0.94 0.00
170_I 136_D 0.94 0.00
327_V 86_R 0.94 0.00
11_L 37_P 0.93 0.00
43_I 133_E 0.92 0.00
90_T 45_R 0.92 0.00
466_V 24_A 0.91 0.00
410_I 21_G 0.91 0.00
408_M 33_Y 0.91 0.00
469_L 26_A 0.91 0.00
477_T 169_E 0.90 0.00
283_D 132_Y 0.90 0.00
138_M 153_M 0.90 0.00
191_A 54_P 0.89 0.00
138_M 14_V 0.89 0.00
393_A 84_D 0.89 0.00
336_G 17_I 0.88 0.00
358_S 41_P 0.88 0.00
179_G 32_M 0.88 0.00
66_A 135_E 0.87 0.00
236_F 161_K 0.87 0.00
279_A 160_G 0.87 0.00
124_F 67_A 0.87 0.00
301_A 17_I 0.86 0.00
329_L 104_L 0.86 0.00
135_L 172_P 0.86 0.00
138_M 69_A 0.86 0.00
57_A 78_Q 0.85 0.00
171_I 27_K 0.85 0.00
165_A 132_Y 0.85 0.00
473_L 104_L 0.85 0.00
314_L 101_F 0.84 0.00
372_V 44_Y 0.84 0.00
329_L 86_R 0.84 0.00
82_I 120_F 0.84 0.00
429_L 172_P 0.84 0.00
10_L 24_A 0.84 0.00
285_P 174_D 0.83 0.00
70_L 12_T 0.83 0.00
270_I 80_A 0.83 0.00
389_G 135_E 0.83 0.00
313_L 104_L 0.83 0.00
433_L 20_I 0.83 0.00
481_Q 168_N 0.83 0.00
314_L 111_T 0.83 0.00
404_L 97_S 0.82 0.00
33_R 21_G 0.82 0.00
436_L 16_S 0.82 0.00
94_S 101_F 0.82 0.00
389_G 31_R 0.81 0.00
115_Y 138_L 0.81 0.00
170_I 142_P 0.81 0.00
329_L 116_L 0.81 0.00
477_T 40_L 0.81 0.00
278_Q 80_A 0.81 0.00
340_A 38_V 0.80 0.00
398_P 16_S 0.80 0.00
164_A 127_R 0.80 0.00
237_P 80_A 0.80 0.00
72_I 29_E 0.80 0.00
185_L 135_E 0.80 0.00
132_S 101_F 0.80 0.00
319_V 117_T 0.80 0.00
132_S 133_E 0.80 0.00
391_A 86_R 0.79 0.00
377_L 39_Y 0.79 0.00
449_P 11_G 0.79 0.00
17_F 104_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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