May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
ALLC - ALLR
UniProt: P77425 - P0ACN4
Length: 682
Sequences: 505
Seq/Len: 0.77
I_Prob: 0.00
ALLC - Allantoate amidohydrolase
Paralog alert: 0.89 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ABGA ABGB ALLC ARGE DAPE PEPT YGEY 		ALLR - HTH-type transcriptional repressor AllR
Paralog alert: 0.70 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ALLR ICLR KDGR MHPR RHMR YAGI YIAJ YJHI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1q7lAC:BDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
54_T 199_A 1.05 0.00
41_Q 48_L 0.94 0.00
45_K 46_I 0.93 0.00
267_V 233_I 0.89 0.00
278_P 92_Y 0.87 0.00
118_V 169_L 0.86 0.00
245_I 155_G 0.83 0.00
206_V 70_V 0.81 0.00
303_E 72_Q 0.79 0.00
405_Y 204_Y 0.78 0.00
142_F 235_I 0.78 0.00
52_L 191_T 0.78 0.00
324_D 199_A 0.77 0.00
277_V 197_E 0.77 0.00
406_Q 120_A 0.77 0.00
236_R 34_L 0.76 0.00
298_F 194_K 0.76 0.00
298_F 57_T 0.75 0.00
227_A 68_D 0.75 0.00
317_I 49_N 0.74 0.00
76_V 261_I 0.74 0.00
393_L 214_G 0.74 0.00
218_V 202_L 0.73 0.00
47_M 108_R 0.73 0.00
184_K 79_W 0.73 0.00
315_I 116_T 0.72 0.00
241_A 197_E 0.72 0.00
206_V 64_L 0.71 0.00
282_T 161_L 0.71 0.00
365_P 212_V 0.71 0.00
346_K 218_I 0.70 0.00
327_P 178_L 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0297 seconds.