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PGMB - YCJN
UniProt: P77366 - P76042
Length: 649
Sequences: 607
Seq/Len: 0.98
I_Prob: 0.00

PGMB - Beta-phosphoglucomutase
Paralog alert: 0.91 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: GPH PGMB YFBT YIEH YIGB YIHX YJJG YNIC YQAB YRFG
YCJN - Putative ABC transporter periplasmic-binding protein YcjN
Paralog alert: 0.81 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4egcA:BContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
130_L 402_V 1.25 0.00
116_S 33_F 0.99 0.00
164_P 310_E 0.98 0.00
82_Y 230_A 0.92 0.00
106_R 258_G 0.88 0.00
170_I 271_P 0.85 0.00
181_N 223_D 0.85 0.00
116_S 145_A 0.84 0.00
81_L 169_Q 0.81 0.00
188_V 421_K 0.81 0.00
207_L 230_A 0.77 0.00
109_Q 56_E 0.76 0.00
106_R 319_V 0.76 0.00
185_M 344_K 0.75 0.00
84_H 168_W 0.74 0.00
5_G 20_G 0.73 0.00
6_V 303_I 0.73 0.00
116_S 227_M 0.71 0.00
190_I 337_G 0.70 0.00
100_S 223_D 0.70 0.00
91_V 169_Q 0.70 0.00
97_G 259_T 0.70 0.00
111_S 150_I 0.70 0.00
170_I 224_T 0.70 0.00
41_N 134_D 0.70 0.00
170_I 346_V 0.69 0.00
190_I 354_D 0.69 0.00
39_Q 262_M 0.69 0.00
175_A 340_L 0.69 0.00
80_L 412_L 0.69 0.00
115_A 206_A 0.68 0.00
127_A 33_F 0.68 0.00
116_S 264_I 0.68 0.00
80_L 61_T 0.68 0.00
168_I 428_E 0.67 0.00
100_S 414_T 0.67 0.00
138_A 150_I 0.66 0.00
116_S 106_D 0.66 0.00
94_V 326_D 0.66 0.00
137_C 63_K 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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