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OPENSEQ.org
DDPB - DDPC
UniProt: P77308 - P77463
Length: 638
Sequences: 5194
Seq/Len: 8.71
I_Prob: 1.00
DDPB - Probable D,D-dipeptide transport system permease protein DdpB
Paralog alert: 0.81 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE 		DDPC - Probable D,D-dipeptide transport system permease protein DdpC
Paralog alert: 0.75 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfG:F:F:GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
148_W 268_G 3.04 1.00
279_L 231_T 2.50 1.00
20_G 135_I 2.21 0.99
327_Y 180_L 1.73 0.97
327_Y 177_G 1.49 0.93
233_E 292_K 1.43 0.91
221_R 283_D 1.42 0.91
229_E 212_P 1.25 0.83
28_I 147_A 1.16 0.77
222_Q 217_Q 1.15 0.75
13_G 127_A 1.12 0.73
268_L 137_L 1.06 0.67
126_R 293_A 1.04 0.65
143_S 279_N 1.04 0.65
140_T 272_L 1.02 0.63
24_I 135_I 1.01 0.62
233_E 185_Y 0.99 0.59
331_D 181_V 0.93 0.52
228_L 286_R 0.82 0.38
221_R 279_N 0.81 0.36
260_I 177_G 0.81 0.36
264_T 177_G 0.79 0.34
228_L 287_D 0.75 0.30
155_V 265_A 0.74 0.29
144_T 272_L 0.74 0.28
148_W 264_C 0.73 0.27
42_G 169_P 0.73 0.27
147_F 230_A 0.73 0.27
148_W 265_A 0.72 0.26
151_L 264_C 0.71 0.25
10_R 131_R 0.67 0.21
70_Y 261_W 0.66 0.20
320_N 173_R 0.65 0.19
151_L 254_R 0.65 0.19
13_G 131_R 0.64 0.18
17_V 135_I 0.64 0.18
334_I 184_Q 0.64 0.18
229_E 286_R 0.62 0.16
279_L 225_A 0.60 0.15
32_I 143_V 0.60 0.14
313_S 139_I 0.59 0.14
234_D 292_K 0.58 0.13
271_G 137_L 0.58 0.13
221_R 216_V 0.57 0.12
9_Q 127_A 0.57 0.12
334_I 180_L 0.57 0.12
32_I 151_A 0.57 0.12
309_A 147_A 0.56 0.12
92_E 245_E 0.56 0.12
224_R 287_D 0.56 0.11
229_E 287_D 0.56 0.11
225_S 216_V 0.55 0.11
324_D 130_M 0.55 0.11
148_W 269_A 0.55 0.11
320_N 137_L 0.55 0.11
264_T 174_L 0.54 0.10
333_R 185_Y 0.54 0.10
264_T 173_R 0.54 0.10
277_A 142_L 0.53 0.10
331_D 185_Y 0.53 0.10
148_W 271_I 0.52 0.09
241_A 190_A 0.52 0.09
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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