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OPENSEQ.org

DDPB - YDDG
UniProt: P77308 - P46136
Length: 633
Sequences: 760
Seq/Len: 1.26
I_Prob: 0.00

DDPB - Probable D,D-dipeptide transport system permease protein DdpB
Paralog alert: 0.81 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
YDDG - Aromatic amino acid exporter YddG
Paralog alert: 0.84 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: EAMA RHTA YDDG YEDA YHBE YICL YIJE YTFF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_I 53_G 1.02 0.00
235_Y 256_S 0.87 0.00
109_L 127_L 0.85 0.00
322_V 98_V 0.83 0.00
236_I 62_K 0.82 0.00
53_I 216_M 0.82 0.00
158_Y 205_P 0.81 0.00
296_S 32_G 0.81 0.00
94_R 97_M 0.81 0.00
255_L 113_F 0.80 0.00
100_T 167_F 0.78 0.00
321_L 65_L 0.77 0.00
204_L 192_L 0.77 0.00
114_I 262_V 0.76 0.00
105_F 279_V 0.76 0.00
38_R 128_L 0.75 0.00
116_I 15_V 0.73 0.00
289_M 282_G 0.72 0.00
116_I 4_Q 0.72 0.00
151_L 158_S 0.72 0.00
309_A 284_L 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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