May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LSRB - LSRK
UniProt: P76142 - P77432
Length: 870
Sequences: 785
Seq/Len: 0.97
I_Prob: 0.00

LSRB - Autoinducer 2-binding protein LsrB
Paralog alert: 0.78 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: ALSB ARAF ASCG CRA CYTR DGAL EBGR GALR GALS GNTR IDNR LACI LSRB MALI PURR RBSB RBSR TORT TRER XYLF YCJW YPHF YTFQ
LSRK - Autoinducer 2 kinase LsrK
Paralog alert: 0.74 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ARAB FUCK GLPK LSRK LYXK RHAB XYLB YGCE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_I 89_A 0.95 0.00
148_V 423_L 0.82 0.00
132_T 376_P 0.80 0.00
57_G 180_S 0.79 0.00
98_L 180_S 0.79 0.00
96_D 28_I 0.78 0.00
96_D 84_I 0.77 0.00
231_A 231_V 0.76 0.00
214_L 487_T 0.76 0.00
155_V 178_M 0.76 0.00
146_R 222_K 0.75 0.00
242_I 17_L 0.74 0.00
59_D 493_E 0.74 0.00
283_L 446_P 0.73 0.00
242_I 35_Q 0.73 0.00
227_A 344_L 0.73 0.00
272_G 125_E 0.73 0.00
210_A 406_A 0.72 0.00
289_K 234_Q 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0976 seconds.