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PAAH - PAAJ
UniProt: P76083 - P0C7L2
Length: 876
Sequences: 1014
Seq/Len: 1.21
I_Prob: 0.00

PAAH - 3-hydroxyadipyl-CoA dehydrogenase
Paralog alert: 0.75 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FADB FADJ PAAH
PAAJ - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase
Paralog alert: 0.73 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ATOB FADA FADI PAAJ YQEF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1wdkAB:CD:ABContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
92_A 265_I 1.02 0.00
60_K 13_P 1.01 0.00
104_A 380_R 0.98 0.00
89_I 234_Q 0.98 0.00
282_V 91_G 0.94 0.00
163_A 309_R 0.91 0.00
8_V 339_L 0.90 0.00
114_T 222_H 0.88 0.00
39_E 49_I 0.87 0.00
115_L 109_G 0.86 0.00
95_R 53_I 0.85 0.00
97_E 313_S 0.84 0.00
128_I 203_E 0.83 0.00
391_W 231_T 0.83 0.00
443_R 101_A 0.82 0.00
216_I 6_I 0.82 0.00
131_E 86_I 0.81 0.00
472_G 237_G 0.79 0.00
198_Y 380_R 0.78 0.00
447_N 331_L 0.78 0.00
101_A 43_R 0.78 0.00
114_T 46_A 0.78 0.00
105_Q 49_I 0.77 0.00
115_L 35_R 0.77 0.00
112_P 197_S 0.76 0.00
466_R 261_A 0.76 0.00
227_P 384_C 0.76 0.00
208_E 239_K 0.76 0.00
118_T 315_H 0.76 0.00
115_L 96_A 0.74 0.00
39_E 201_L 0.74 0.00
278_S 253_A 0.74 0.00
424_N 121_S 0.74 0.00
267_E 16_R 0.74 0.00
412_E 113_I 0.73 0.00
25_A 107_G 0.72 0.00
55_R 265_I 0.72 0.00
239_Q 44_L 0.72 0.00
15_T 21_L 0.72 0.00
150_M 369_A 0.72 0.00
80_H 239_K 0.71 0.00
172_L 320_I 0.71 0.00
98_V 75_A 0.71 0.00
460_C 96_A 0.71 0.00
393_T 49_I 0.71 0.00
416_D 25_R 0.71 0.00
172_L 53_I 0.70 0.00
87_L 36_E 0.70 0.00
58_R 312_L 0.70 0.00
155_V 334_L 0.70 0.00
445_L 86_I 0.70 0.00
13_S 20_A 0.70 0.00
115_L 380_R 0.69 0.00
276_K 228_P 0.69 0.00
145_N 168_E 0.69 0.00
61_L 179_E 0.69 0.00
416_D 109_G 0.69 0.00
82_L 34_L 0.68 0.00
128_I 366_L 0.68 0.00
6_Q 308_E 0.68 0.00
36_I 179_E 0.68 0.00
98_V 388_I 0.68 0.00
436_L 45_D 0.68 0.00
158_G 279_R 0.68 0.00
61_L 50_D 0.68 0.00
435_Q 77_L 0.68 0.00
416_D 174_L 0.68 0.00
117_T 333_V 0.68 0.00
89_I 12_T 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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