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OPENSEQ.org
YCJN - YCJR
UniProt: P76042 - P76044
Length: 692
Sequences: 654
Seq/Len: 0.97
I_Prob: 0.00
YCJN - Putative ABC transporter periplasmic-binding protein YcjN
Paralog alert: 0.81 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB 		YCJR - Uncharacterized protein YcjR
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_V 85_L 1.00 0.00
120_G 75_L 0.92 0.00
50_I 91_V 0.85 0.00
88_V 92_G 0.84 0.00
136_S 30_F 0.82 0.00
163_E 206_I 0.81 0.00
158_A 55_V 0.81 0.00
172_L 119_D 0.81 0.00
239_A 204_V 0.80 0.00
107_R 52_G 0.80 0.00
53_F 174_V 0.80 0.00
232_T 127_D 0.80 0.00
170_Q 39_N 0.79 0.00
20_G 23_K 0.78 0.00
31_I 28_D 0.77 0.00
62_V 123_K 0.77 0.00
326_D 49_K 0.76 0.00
414_T 190_L 0.76 0.00
134_D 23_K 0.75 0.00
55_K 143_V 0.74 0.00
261_P 225_F 0.74 0.00
56_E 85_L 0.74 0.00
170_Q 49_K 0.73 0.00
204_Q 195_H 0.73 0.00
175_A 165_Y 0.73 0.00
25_N 227_Q 0.73 0.00
88_V 172_K 0.72 0.00
157_L 24_E 0.72 0.00
216_A 45_K 0.72 0.00
314_A 176_I 0.72 0.00
413_S 143_V 0.71 0.00
398_V 235_G 0.71 0.00
166_K 53_L 0.71 0.00
186_Y 145_L 0.71 0.00
314_A 22_I 0.70 0.00
31_I 138_R 0.70 0.00
414_T 127_D 0.70 0.00
63_K 167_V 0.70 0.00
181_P 229_R 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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