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OPENSEQ.org
RUTD - RUTF
UniProt: P75895 - P75893
Length: 430
Sequences: 560
Seq/Len: 1.36
I_Prob: 0.00
RUTD - Putative aminoacrylate hydrolase RutD
Paralog alert: 0.81 [within 20: 0.26] - ratio of genomes with paralogs
Cluster includes: BIOH DLHH MENH MHPC PLDB RUTD YBFF YCJY YFHR YGHX YJFP 		RUTF - FMN reductase (NADH) RutF
Paralog alert: 0.51 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RUTF YDDH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
23_G 23_I 0.94 0.00
249_A 136_A 0.84 0.00
64_A 63_F 0.84 0.00
33_L 107_C 0.83 0.00
16_V 73_T 0.83 0.00
113_G 133_L 0.83 0.00
248_N 117_F 0.80 0.00
222_A 40_C 0.80 0.00
103_A 8_T 0.80 0.00
119_A 126_S 0.80 0.00
35_V 29_A 0.79 0.00
43_V 114_L 0.79 0.00
134_S 134_F 0.76 0.00
202_Q 45_T 0.75 0.00
249_A 77_G 0.75 0.00
32_Q 34_F 0.75 0.00
55_D 23_I 0.74 0.00
93_V 12_A 0.73 0.00
204_I 55_R 0.73 0.00
195_D 76_A 0.73 0.00
243_D 9_F 0.72 0.00
17_V 146_P 0.72 0.00
254_G 45_T 0.71 0.00
250_L 14_S 0.71 0.00
71_H 29_A 0.71 0.00
141_V 114_L 0.70 0.00
70_L 99_R 0.70 0.00
171_H 96_A 0.70 0.00
100_D 113_A 0.70 0.00
142_E 121_I 0.70 0.00
104_S 110_L 0.70 0.00
42_V 116_S 0.69 0.00
40_Y 47_P 0.69 0.00
233_P 55_R 0.69 0.00
97_L 155_S 0.69 0.00
94_G 66_N 0.69 0.00
156_A 151_W 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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