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OPENSEQ.org
IF1 - SECY
UniProt: P69222 - P0AGA2
Length: 515
Sequences: 691
Seq/Len: 1.39
I_Prob: 0.89
IF1 - Translation initiation factor IF-1
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: IF1 		SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_V 343_A 1.99 0.89
63_S 48_V 1.36 0.47
58_T 424_M 1.32 0.43
64_K 405_S 1.25 0.37
65_G 423_L 1.25 0.36
52_K 243_R 1.21 0.33
36_I 216_H 1.20 0.32
28_N 82_I 1.19 0.30
69_F 433_L 1.18 0.30
55_V 372_R 1.18 0.30
15_E 67_F 1.15 0.27
68_V 119_Y 1.14 0.27
64_K 104_E 1.13 0.26
58_T 247_N 1.12 0.25
31_V 283_I 1.12 0.25
64_K 311_Q 1.12 0.25
6_N 155_A 1.11 0.24
47_I 68_S 1.09 0.22
16_T 240_G 1.07 0.21
52_K 114_R 1.06 0.20
40_M 430_E 1.06 0.20
64_K 80_L 1.05 0.20
44_Y 399_F 1.05 0.19
36_I 98_V 1.04 0.18
52_K 187_I 1.04 0.18
44_Y 65_N 1.03 0.18
69_F 169_M 1.03 0.18
32_V 323_S 1.01 0.17
43_N 396_K 1.01 0.16
40_M 433_L 1.00 0.16
55_V 342_T 0.99 0.15
69_F 98_V 0.99 0.15
63_S 308_L 0.98 0.15
52_K 398_P 0.98 0.15
16_T 37_S 0.98 0.15
2_A 373_L 0.97 0.14
65_G 269_V 0.96 0.14
27_E 415_D 0.96 0.14
27_E 33_F 0.96 0.13
34_A 95_L 0.95 0.13
2_A 48_V 0.95 0.13
58_T 230_V 0.94 0.13
55_V 390_F 0.94 0.13
14_L 221_L 0.94 0.13
13_V 166_T 0.94 0.12
44_Y 111_S 0.94 0.12
16_T 358_P 0.93 0.12
63_S 221_L 0.93 0.12
27_E 373_L 0.93 0.12
14_L 74_R 0.93 0.12
13_V 106_K 0.93 0.12
35_H 410_V 0.92 0.12
46_R 95_L 0.92 0.11
52_K 75_A 0.91 0.11
6_N 148_L 0.91 0.11
47_I 190_I 0.91 0.11
35_H 23_L 0.91 0.11
50_G 110_E 0.91 0.11
2_A 63_M 0.91 0.11
13_V 122_Y 0.90 0.11
63_S 54_E 0.90 0.11
9_M 405_S 0.90 0.10
25_E 351_A 0.89 0.10
2_A 424_M 0.88 0.10
6_N 226_L 0.88 0.10
58_T 204_A 0.88 0.10
55_V 373_L 0.87 0.10
16_T 348_K 0.87 0.09
64_K 98_V 0.87 0.09
55_V 23_L 0.87 0.09
16_T 277_A 0.87 0.09
52_K 220_L 0.87 0.09
57_L 338_N 0.87 0.09
14_L 364_K 0.86 0.09
52_K 353_V 0.86 0.09
21_M 29_A 0.86 0.09
46_R 262_S 0.85 0.09
43_N 277_A 0.85 0.09
63_S 393_D 0.85 0.09
36_I 179_T 0.85 0.09
52_K 158_F 0.85 0.09
43_N 18_E 0.84 0.08
59_P 416_F 0.84 0.08
58_T 339_P 0.84 0.08
50_G 102_L 0.84 0.08
44_Y 296_G 0.83 0.08
63_S 208_E 0.83 0.08
36_I 27_I 0.83 0.08
56_E 77_I 0.83 0.08
9_M 165_V 0.83 0.08
5_D 39_I 0.83 0.08
12_T 383_F 0.83 0.08
49_T 412_V 0.83 0.08
42_K 62_E 0.83 0.08
21_M 107_K 0.82 0.08
16_T 405_S 0.82 0.08
9_M 342_T 0.82 0.08
36_I 161_V 0.82 0.08
14_L 27_I 0.82 0.07
11_G 43_G 0.82 0.07
10_Q 162_V 0.82 0.07
57_L 434_K 0.81 0.07
40_M 98_V 0.81 0.07
43_N 43_G 0.81 0.07
35_H 326_I 0.81 0.07
31_V 352_F 0.81 0.07
63_S 384_I 0.80 0.07
14_L 314_Q 0.80 0.07
32_V 366_I 0.80 0.07
44_Y 281_S 0.80 0.07
25_E 126_V 0.80 0.07
27_E 308_L 0.80 0.07
68_V 18_E 0.80 0.07
62_L 331_F 0.79 0.07
33_T 301_N 0.79 0.07
50_G 114_R 0.79 0.06
1_M 234_V 0.79 0.06
44_Y 47_A 0.79 0.06
28_N 276_P 0.79 0.06
56_E 223_V 0.78 0.06
46_R 38_F 0.78 0.06
43_N 129_I 0.78 0.06
14_L 323_S 0.78 0.06
4_E 183_I 0.78 0.06
15_E 390_F 0.78 0.06
36_I 79_A 0.78 0.06
63_S 218_L 0.78 0.06
44_Y 164_L 0.78 0.06
43_N 67_F 0.78 0.06
29_G 116_I 0.78 0.06
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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