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OPENSEQ.org
BCSQ - DPPC
UniProt: P37655 - P0AEG1
Length: 550
Sequences: 396
Seq/Len: 0.77
I_Prob: 0.00
BCSQ - Putative cellulose biosynthesis protein BcsQ
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: BCSQ MIND 		DPPC - Dipeptide transport system permease protein DppC
Paralog alert: 0.76 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfG:FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
165_G 133_I 1.05 0.00
32_N 192_Y 1.01 0.00
81_L 255_L 0.95 0.00
182_D 193_V 0.95 0.00
117_R 140_I 0.92 0.00
35_V 235_A 0.91 0.00
17_T 255_L 0.89 0.00
122_L 219_L 0.89 0.00
121_I 106_C 0.87 0.00
166_A 192_Y 0.83 0.00
33_V 212_F 0.83 0.00
33_V 219_L 0.82 0.00
185_Q 37_V 0.82 0.00
74_R 192_Y 0.81 0.00
195_L 149_L 0.81 0.00
222_A 270_T 0.81 0.00
3_V 195_A 0.81 0.00
149_V 246_P 0.80 0.00
235_C 258_V 0.79 0.00
4_L 235_A 0.79 0.00
35_V 186_V 0.78 0.00
122_L 102_L 0.78 0.00
32_N 144_L 0.78 0.00
81_L 262_A 0.77 0.00
199_I 208_F 0.77 0.00
145_A 25_Y 0.76 0.00
169_L 202_G 0.75 0.00
78_Q 27_K 0.75 0.00
185_Q 126_F 0.74 0.00
19_T 208_F 0.74 0.00
33_V 133_I 0.74 0.00
226_E 37_V 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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