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OPENSEQ.org
LRHA - NUOE
UniProt: P36771 - P0AFD1
Length: 478
Sequences: 367
Seq/Len: 0.85
I_Prob: 0.00
LRHA - Probable HTH-type transcriptional regulator LrhA
Paralog alert: 0.88 [within 20: 0.48] - ratio of genomes with paralogs
Cluster includes: AAER ABGR ALLS CBL CYNR CYSB DMLR DSDC GCVA HCAR HDFR ICIA ILVY LEUO LRHA LYSR METR NAC NHAR OXYR PERR TDCA TTDR XAPR YAFC YAHB YBDO YBEF YBHD YCAN YCJZ YDCI YDHB YEEY YEIE YFER YFIE YGFI YHAJ YHJC YIAU YIDZ YJIE YNEJ YNFL 		NUOE - NADH-quinone oxidoreductase subunit E
Paralog alert: 0.19 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_V 126_F 1.13 0.00
144_L 132_C 1.02 0.00
111_D 74_T 0.98 0.00
153_V 49_W 0.98 0.00
232_G 154_T 0.97 0.00
163_A 115_I 0.96 0.00
40_S 74_T 0.92 0.00
175_C 74_T 0.89 0.00
161_F 47_R 0.89 0.00
137_N 74_T 0.87 0.00
140_M 104_G 0.85 0.00
24_D 74_T 0.84 0.00
104_G 155_P 0.83 0.00
45_Q 110_E 0.83 0.00
52_L 143_M 0.81 0.00
108_E 140_G 0.80 0.00
129_A 25_E 0.80 0.00
206_L 69_V 0.79 0.00
59_A 89_I 0.79 0.00
270_P 27_H 0.79 0.00
47_Q 156_E 0.79 0.00
168_T 154_T 0.78 0.00
76_G 99_I 0.77 0.00
282_Q 158_I 0.76 0.00
154_T 105_I 0.76 0.00
114_L 69_V 0.76 0.00
238_R 74_T 0.76 0.00
97_L 58_I 0.75 0.00
33_A 71_G 0.75 0.00
54_G 83_P 0.75 0.00
207_N 37_I 0.75 0.00
101_L 119_Q 0.74 0.00
117_L 138_D 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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