May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YEJA - YEJF
UniProt: P33913 - P33916
Length: 1133
Sequences: 1498
Seq/Len: 1.39
I_Prob: 0.00

YEJA - Uncharacterized protein YejA
Paralog alert: 0.78 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: DDPA DPPA GSIB MPPA NIKA OPPA SAPA SGRR YBAE YEJA YGIS
YEJF - Uncharacterized ABC transporter ATP-binding protein YejF
Paralog alert: 0.90 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
539_L 309_L 1.09 0.00
517_P 235_C 0.84 0.00
498_I 326_S 0.83 0.00
413_A 476_Q 0.81 0.00
246_F 213_I 0.76 0.00
168_V 32_I 0.75 0.00
547_L 385_I 0.75 0.00
119_I 177_L 0.74 0.00
246_F 514_F 0.74 0.00
517_P 5_L 0.72 0.00
403_L 40_L 0.70 0.00
411_N 133_E 0.70 0.00
334_F 134_I 0.70 0.00
179_D 242_A 0.69 0.00
459_N 523_R 0.69 0.00
333_D 138_L 0.69 0.00
538_P 309_L 0.69 0.00
427_T 342_I 0.68 0.00
411_N 381_V 0.68 0.00
57_T 12_S 0.68 0.00
104_E 446_L 0.67 0.00
163_I 132_G 0.67 0.00
412_E 201_E 0.67 0.00
165_P 342_I 0.65 0.00
331_A 49_S 0.64 0.00
107_R 326_S 0.63 0.00
433_F 440_L 0.63 0.00
134_R 55_I 0.63 0.00
118_A 447_I 0.62 0.00
174_K 275_L 0.62 0.00
219_K 241_A 0.62 0.00
343_Y 316_G 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1419 seconds.